Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 4324809..4324903 Replicon chromosome
Accession NZ_CP009991
Organism Yersinia pestis strain Nicholisk 41

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 4324809..4324902 (+)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 4324809..4324903 (-)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
CH63_RS20915 4320380..4321331 + 952 Protein_3731 prolyl aminopeptidase -
CH63_RS20920 4321391..4321621 - 231 WP_002211091.1 DNA polymerase III subunit theta -
CH63_RS20925 4322022..4322531 + 510 WP_002211092.1 non-heme ferritin -
CH63_RS20930 4322928..4323314 + 387 WP_002211093.1 CopC domain-containing protein YobA -
CH63_RS20935 4323317..4324201 + 885 WP_002211094.1 copper homeostasis membrane protein CopD -
CH63_RS20940 4324298..4324639 + 342 WP_002211095.1 YebY family protein -
- 4324809..4324902 + 94 - - Toxin
- 4324809..4324903 - 95 - - Antitoxin
CH63_RS20950 4325162..4325488 - 327 WP_002211097.1 DUF1493 family protein -
CH63_RS20955 4325482..4325940 - 459 WP_002211098.1 hypothetical protein -
CH63_RS20960 4326472..4327632 + 1161 WP_002211099.1 flagellar type III secretion system protein FlhB -
CH63_RS20965 4327632..4329710 + 2079 WP_002211100.1 flagellar biosynthesis protein FlhA -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 94 bp

>T50216 NZ_CP009991:4324809-4324902 [Yersinia pestis]
TAAGCCTACATTAATACCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATCAGGAATCGTA
TTCGGTCTTTTTTT

Antitoxin


Download         Length: 95 bp

>AT50216 NZ_CP009991:c4324903-4324809 [Yersinia pestis]
TAAAAAAAGACCGAATACGATTCCTGATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGT
ATTAATGTAGGCTTA

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References