Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 794389..794483 Replicon chromosome
Accession NZ_CP009973
Organism Yersinia pestis CO92

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 794390..794483 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 794389..794483 (+)

Genomic Context


Locus tag Coordinates Strand Size (bp) Protein ID Product Description
AK38_RS04845 789582..791660 - 2079 WP_002211100.1 flagellar biosynthesis protein FlhA -
AK38_RS04850 791660..792820 - 1161 WP_002211099.1 flagellar type III secretion system protein FlhB -
AK38_RS04855 793352..793810 + 459 WP_002211098.1 hypothetical protein -
AK38_RS04860 793804..794130 + 327 WP_002211097.1 DUF1493 family protein -
- 794389..794483 + 95 - - Antitoxin
- 794390..794483 - 94 - - Toxin
AK38_RS04870 794653..794994 - 342 WP_002211095.1 YebY family protein -
AK38_RS04875 795091..795975 - 885 WP_002211094.1 copper homeostasis membrane protein CopD -
AK38_RS04880 795978..796364 - 387 WP_002211093.1 CopC domain-containing protein YobA -
AK38_RS04885 796761..797270 - 510 WP_002211092.1 non-heme ferritin -
AK38_RS04890 797671..797901 + 231 WP_002211091.1 DNA polymerase III subunit theta -
AK38_RS04895 797961..798911 - 951 WP_002211090.1 prolyl aminopeptidase -

Associated MGEs


MGE
detail
Similar
MGEs
Relative
position
MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences


Toxin        


Download         Length: 94 bp

>T50186 NZ_CP009973:c794483-794390 [Yersinia pestis CO92]
TAAGCCTACATTAATACCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATCAGGAATCGTA
TTCGGTCTTTTTTT

Antitoxin


Download         Length: 95 bp

>AT50186 NZ_CP009973:794389-794483 [Yersinia pestis CO92]
TAAAAAAAGACCGAATACGATTCCTGATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGT
ATTAATGTAGGCTTA

Structures


Antitoxin

Download structure file

Antitoxin

Download structure file

References