Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
Location | 794389..794483 | Replicon | chromosome |
Accession | NZ_CP009973 | ||
Organism | Yersinia pestis CO92 |
Toxin (RNA)
Gene name | SdsR | ||
Locus tag | - | ||
Coordinates | 794390..794483 (-) |
Antitoxin (RNA)
Gene name | RyeA | ||
Locus tag | - | ||
Coordinates | 794389..794483 (+) |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
AK38_RS04845 | 789582..791660 | - | 2079 | WP_002211100.1 | flagellar biosynthesis protein FlhA | - |
AK38_RS04850 | 791660..792820 | - | 1161 | WP_002211099.1 | flagellar type III secretion system protein FlhB | - |
AK38_RS04855 | 793352..793810 | + | 459 | WP_002211098.1 | hypothetical protein | - |
AK38_RS04860 | 793804..794130 | + | 327 | WP_002211097.1 | DUF1493 family protein | - |
- | 794389..794483 | + | 95 | - | - | Antitoxin |
- | 794390..794483 | - | 94 | - | - | Toxin |
AK38_RS04870 | 794653..794994 | - | 342 | WP_002211095.1 | YebY family protein | - |
AK38_RS04875 | 795091..795975 | - | 885 | WP_002211094.1 | copper homeostasis membrane protein CopD | - |
AK38_RS04880 | 795978..796364 | - | 387 | WP_002211093.1 | CopC domain-containing protein YobA | - |
AK38_RS04885 | 796761..797270 | - | 510 | WP_002211092.1 | non-heme ferritin | - |
AK38_RS04890 | 797671..797901 | + | 231 | WP_002211091.1 | DNA polymerase III subunit theta | - |
AK38_RS04895 | 797961..798911 | - | 951 | WP_002211090.1 | prolyl aminopeptidase | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 94 bp
>T50186 NZ_CP009973:c794483-794390 [Yersinia pestis CO92]
TAAGCCTACATTAATACCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATCAGGAATCGTA
TTCGGTCTTTTTTT
TAAGCCTACATTAATACCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATCAGGAATCGTA
TTCGGTCTTTTTTT
Antitoxin
Download Length: 95 bp
>AT50186 NZ_CP009973:794389-794483 [Yersinia pestis CO92]
TAAAAAAAGACCGAATACGATTCCTGATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGT
ATTAATGTAGGCTTA
TAAAAAAAGACCGAATACGATTCCTGATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGT
ATTAATGTAGGCTTA