Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2669670..2669761 | Replicon | chromosome |
| Accession | NZ_CP009935 | ||
| Organism | Yersinia pestis Angola | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2669670..2669761 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2669670..2669761 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CH56_RS13245 | 2665205..2666352 | + | 1148 | Protein_2370 | MFS transporter | - |
| CH56_RS13250 | 2666506..2667240 | - | 735 | WP_002211334.1 | pyruvate formate lyase 1-activating protein | - |
| CH56_RS13255 | 2668227..2668901 | + | 675 | WP_002211333.1 | glycosyltransferase family 25 protein | - |
| CH56_RS13260 | 2669068..2669526 | - | 459 | WP_002213759.1 | IS200/IS605-like element IS1541A family transposase | - |
| - | 2669670..2669761 | - | 92 | - | - | Toxin |
| CH56_RS13270 | 2669931..2670272 | - | 342 | WP_002211095.1 | YebY family protein | - |
| CH56_RS13275 | 2670369..2671253 | - | 885 | WP_002211094.1 | copper homeostasis membrane protein CopD | - |
| CH56_RS13280 | 2671256..2671642 | - | 387 | WP_002211093.1 | CopC domain-containing protein YobA | - |
| CH56_RS13285 | 2671874..2672086 | + | 213 | WP_041854784.1 | hypothetical protein | - |
| CH56_RS13290 | 2672119..2672628 | - | 510 | WP_002211092.1 | non-heme ferritin | - |
| CH56_RS13295 | 2673029..2673259 | + | 231 | WP_002211091.1 | DNA polymerase III subunit theta | - |
| CH56_RS13300 | 2673319..2674269 | - | 951 | WP_002211090.1 | prolyl aminopeptidase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | flank | IS/Tn | - | - | 2669068..2669526 | 458 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 92 bp
>T50162 NZ_CP009935:c2669761-2669670 [Yersinia pestis Angola]
TAAGCCTACATTAATACCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATCAGGAATCGTA
TTCGGTCTTTTT
TAAGCCTACATTAATACCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATCAGGAATCGTA
TTCGGTCTTTTT
Antitoxin
Download Length: 92 bp
>AT50162 NZ_CP009935:2669670-2669761 [Yersinia pestis Angola]
AAAAAGACCGAATACGATTCCTGATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGTATT
AATGTAGGCTTA
AAAAAGACCGAATACGATTCCTGATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGTATT
AATGTAGGCTTA
