Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) hicAB/HicB-HicA
Location 4441057..4441703 Replicon chromosome
Accession NZ_CP009906
Organism Yersinia pestis Antiqua

Toxin (Protein)


Gene name hicA Uniprot ID A0A3G5L3F2
Locus tag CH58_RS21845 Protein ID WP_002214976.1
Coordinates 4441521..4441703 (-) Length 61 a.a.

Antitoxin (Protein)


Gene name hicB Uniprot ID A0A0U1R391
Locus tag CH58_RS21840 Protein ID WP_002211129.1
Coordinates 4441057..4441476 (-) Length 140 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
CH58_RS21820 4436129..4437124 + 996 WP_002211125.1 substrate-binding domain-containing protein -
CH58_RS21825 4437190..4438767 + 1578 WP_002211126.1 sugar ABC transporter ATP-binding protein -
CH58_RS21830 4438770..4439791 + 1022 Protein_3882 ABC transporter permease -
CH58_RS21835 4439840..4440799 + 960 WP_002211128.1 sugar kinase -
CH58_RS21840 4441057..4441476 - 420 WP_002211129.1 type II toxin-antitoxin system HicB family antitoxin Antitoxin
CH58_RS21845 4441521..4441703 - 183 WP_002214976.1 type II toxin-antitoxin system HicA family toxin Toxin
CH58_RS21850 4441910..4442692 - 783 WP_002211130.1 flagellar type III secretion system protein FliR -
CH58_RS21855 4442695..4442964 - 270 WP_002211131.1 flagellar biosynthesis protein FliQ -
CH58_RS21860 4443070..4443810 - 741 WP_002220494.1 flagellar type III secretion system pore protein FliP -
CH58_RS21865 4443891..4444427 - 537 WP_002211133.1 flagellar biosynthetic protein FliO -
CH58_RS21870 4444427..4444843 - 417 WP_002211134.1 flagellar motor switch protein FliN -
CH58_RS21875 4444840..4445841 - 1002 WP_002211135.1 flagellar motor switch protein FliM -
CH58_RS21880 4445847..4446317 - 471 WP_002227961.1 flagellar basal body-associated protein FliL -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

HicA mRNA interferase family

(4-59)

Antitoxin

HicB-like antitoxin of toxin-antitoxin system

(4-131)


Sequences

Toxin        


Download         Length: 61 a.a.        Molecular weight: 6783.99 Da        Isoelectric Point: 10.8877

>T50149 WP_002214976.1 NZ_CP009906:c4441703-4441521 [Yersinia pestis Antiqua]
VKSSELIKLLETNGWKLMRVKGSHHQFKHPDFAAVITVPHPKKDVKPGTLRQILKDANLS

Download         Length: 183 bp

>T50149 NZ_CP009906:c4441703-4441521 [Yersinia pestis Antiqua]
GTGAAAAGTTCGGAGCTGATAAAACTGCTCGAAACAAATGGTTGGAAGTTGATGAGAGTTAAAGGCAGTCATCATCAATT
CAAACATCCTGATTTCGCGGCAGTCATAACAGTACCGCATCCCAAAAAGGATGTTAAACCGGGAACCCTCCGGCAAATTC
TGAAAGATGCAAACCTTAGTTAA

Antitoxin


Download         Length: 140 a.a.        Molecular weight: 15549.42 Da        Isoelectric Point: 4.7731

>AT50149 WP_002211129.1 NZ_CP009906:c4441476-4441057 [Yersinia pestis Antiqua]
MAIYPAYVHVDNDGSASGYFPDVKGCIFAINAGEDLFAEASSALDAHFEALVSEGIEIPEAHDMPYHVYRNPCDYADGGQ
WYNVNIDMSKYDGKVERINVTLPHRLIHQIDTIVKVRPEYASRSNFLAEAARKELQKLA

Download         Length: 420 bp

>AT50149 NZ_CP009906:c4441476-4441057 [Yersinia pestis Antiqua]
ATGGCTATCTATCCCGCCTATGTTCACGTTGATAATGATGGCTCGGCAAGCGGTTATTTCCCCGATGTCAAAGGCTGTAT
TTTTGCCATCAATGCCGGGGAGGATTTATTTGCAGAAGCATCAAGCGCCCTGGATGCACACTTTGAAGCTTTGGTGTCTG
AAGGTATCGAAATTCCTGAAGCTCATGACATGCCTTACCACGTTTACCGTAACCCATGCGATTACGCTGATGGCGGACAG
TGGTATAACGTGAATATTGATATGTCGAAATATGATGGAAAAGTTGAACGAATTAACGTCACTCTTCCGCACCGGCTGAT
TCATCAAATCGATACTATTGTTAAAGTGCGTCCCGAGTATGCCAGCCGAAGCAATTTTCTAGCCGAAGCAGCACGTAAAG
AATTACAGAAATTGGCGTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A3G5L3F2

Antitoxin

Source ID Structure
AlphaFold DB A0A0U1R391

References