Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | tacT-ataR/DUF1778(antitoxin) |
Location | 1143839..1144593 | Replicon | chromosome |
Accession | NZ_CP009885 | ||
Organism | Xylella fastidiosa strain Hib4 |
Toxin (Protein)
Gene name | tacT | Uniprot ID | - |
Locus tag | XFHB_RS05560 | Protein ID | WP_088577922.1 |
Coordinates | 1143839..1144324 (-) | Length | 162 a.a. |
Antitoxin (Protein)
Gene name | ataR | Uniprot ID | - |
Locus tag | XFHB_RS05565 | Protein ID | WP_088577921.1 |
Coordinates | 1144321..1144593 (-) | Length | 91 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
XFHB_RS05525 | 1139913..1140281 | + | 369 | WP_088577960.1 | hypothetical protein | - |
XFHB_RS05530 | 1140278..1140505 | + | 228 | WP_057683524.1 | hypothetical protein | - |
XFHB_RS05535 | 1140576..1140938 | - | 363 | WP_088577961.1 | PIN domain-containing protein | - |
XFHB_RS05540 | 1140935..1141189 | - | 255 | WP_088577927.1 | plasmid stability protein stbC | - |
XFHB_RS05545 | 1141443..1141757 | - | 315 | WP_060871452.1 | hypothetical protein | - |
XFHB_RS05550 | 1141825..1142418 | - | 594 | WP_088577926.1 | hypothetical protein | - |
XFHB_RS05555 | 1143403..1143588 | - | 186 | WP_088577923.1 | hypothetical protein | - |
XFHB_RS05560 | 1143839..1144324 | - | 486 | WP_088577922.1 | GNAT family N-acetyltransferase | Toxin |
XFHB_RS05565 | 1144321..1144593 | - | 273 | WP_088577921.1 | DUF1778 domain-containing protein | Antitoxin |
XFHB_RS05570 | 1144907..1145233 | - | 327 | WP_088577962.1 | DNA-binding protein | - |
XFHB_RS05575 | 1145363..1145683 | - | 321 | WP_004091397.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
XFHB_RS05580 | 1146116..1146355 | + | 240 | WP_088577963.1 | ribbon-helix-helix domain-containing protein | - |
XFHB_RS05585 | 1146355..1146774 | + | 420 | WP_088371503.1 | putative toxin-antitoxin system toxin component, PIN family | - |
XFHB_RS05590 | 1146945..1147229 | + | 285 | WP_031337222.1 | hypothetical protein | - |
XFHB_RS05595 | 1147288..1147845 | + | 558 | WP_088578573.1 | recombinase family protein | - |
XFHB_RS14215 | 1148177..1148431 | - | 255 | Protein_1025 | hypothetical protein | - |
XFHB_RS05605 | 1148698..1149123 | - | 426 | WP_088578574.1 | antirestriction protein | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|---|---|---|---|---|---|---|
- | flank | IS/Tn | - | - | 1147288..1147845 | 557 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 162 a.a. Molecular weight: 17817.56 Da Isoelectric Point: 9.7126
>T50119 WP_088577922.1 NZ_CP009885:c1144324-1143839 [Xylella fastidiosa]
VNMQISTPHSLTAAHRLDEFNCGEPSLDDWLKRRALTNHLNGASRTFVVVDANQYVLGYYALAAGSVAHQEATRAIRGNM
PDPVPVMVLGRLAVDTRAQGIRLGAALLKDTVTRVQSIAENVGVRALVVHALNERAKQFYEYYGFRASPMHLMTLMLPIK
F
VNMQISTPHSLTAAHRLDEFNCGEPSLDDWLKRRALTNHLNGASRTFVVVDANQYVLGYYALAAGSVAHQEATRAIRGNM
PDPVPVMVLGRLAVDTRAQGIRLGAALLKDTVTRVQSIAENVGVRALVVHALNERAKQFYEYYGFRASPMHLMTLMLPIK
F
Download Length: 486 bp
>T50119 NZ_CP009885:c1144324-1143839 [Xylella fastidiosa]
GTGAATATGCAGATTTCGACACCTCATTCACTCACGGCAGCGCATCGACTCGATGAATTCAATTGCGGTGAGCCATCGCT
GGATGATTGGCTTAAACGACGCGCATTGACCAACCATTTAAACGGGGCCAGCCGGACCTTCGTTGTTGTCGATGCCAACC
AGTACGTGCTTGGGTACTACGCTTTGGCAGCTGGGTCTGTCGCGCATCAAGAGGCCACGCGTGCTATCCGAGGTAATATG
CCTGATCCAGTGCCGGTCATGGTGCTCGGAAGGCTGGCTGTGGATACTCGCGCTCAAGGCATCAGACTCGGTGCGGCCTT
GCTTAAAGATACGGTAACTCGTGTACAGTCCATTGCAGAGAACGTCGGCGTCAGGGCATTGGTAGTGCATGCGTTGAACG
AGCGCGCAAAGCAATTCTACGAGTACTATGGTTTTCGAGCGTCACCAATGCACCTGATGACCTTGATGCTTCCGATTAAA
TTCTAG
GTGAATATGCAGATTTCGACACCTCATTCACTCACGGCAGCGCATCGACTCGATGAATTCAATTGCGGTGAGCCATCGCT
GGATGATTGGCTTAAACGACGCGCATTGACCAACCATTTAAACGGGGCCAGCCGGACCTTCGTTGTTGTCGATGCCAACC
AGTACGTGCTTGGGTACTACGCTTTGGCAGCTGGGTCTGTCGCGCATCAAGAGGCCACGCGTGCTATCCGAGGTAATATG
CCTGATCCAGTGCCGGTCATGGTGCTCGGAAGGCTGGCTGTGGATACTCGCGCTCAAGGCATCAGACTCGGTGCGGCCTT
GCTTAAAGATACGGTAACTCGTGTACAGTCCATTGCAGAGAACGTCGGCGTCAGGGCATTGGTAGTGCATGCGTTGAACG
AGCGCGCAAAGCAATTCTACGAGTACTATGGTTTTCGAGCGTCACCAATGCACCTGATGACCTTGATGCTTCCGATTAAA
TTCTAG
Antitoxin
Download Length: 91 a.a. Molecular weight: 10281.79 Da Isoelectric Point: 4.7419
>AT50119 WP_088577921.1 NZ_CP009885:c1144593-1144321 [Xylella fastidiosa]
MRDASINLRAMPEQRDLIDQAANLLGKNRSDFMLEAACERAKAIILDQVFFNLDEERFRQFTVLLDAPQDTNLGLNRLMA
IKAPWSISNT
MRDASINLRAMPEQRDLIDQAANLLGKNRSDFMLEAACERAKAIILDQVFFNLDEERFRQFTVLLDAPQDTNLGLNRLMA
IKAPWSISNT
Download Length: 273 bp
>AT50119 NZ_CP009885:c1144593-1144321 [Xylella fastidiosa]
ATGCGCGACGCTTCCATCAACTTACGTGCCATGCCTGAGCAGCGCGACTTGATTGACCAGGCTGCTAATCTATTAGGCAA
GAATCGCTCAGACTTCATGCTAGAAGCTGCGTGCGAGCGTGCGAAAGCAATTATCCTGGATCAAGTCTTTTTTAATCTGG
ACGAAGAGAGGTTCCGGCAATTCACTGTGTTGCTTGATGCGCCACAAGACACCAATCTCGGCCTTAATCGCCTGATGGCA
ATTAAGGCTCCGTGGAGCATCAGCAATACGTGA
ATGCGCGACGCTTCCATCAACTTACGTGCCATGCCTGAGCAGCGCGACTTGATTGACCAGGCTGCTAATCTATTAGGCAA
GAATCGCTCAGACTTCATGCTAGAAGCTGCGTGCGAGCGTGCGAAAGCAATTATCCTGGATCAAGTCTTTTTTAATCTGG
ACGAAGAGAGGTTCCGGCAATTCACTGTGTTGCTTGATGCGCCACAAGACACCAATCTCGGCCTTAATCGCCTGATGGCA
ATTAAGGCTCCGTGGAGCATCAGCAATACGTGA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Structures
Toxin
Source | ID | Structure |
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Antitoxin
Source | ID | Structure |
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