Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | tacT-ataR/DUF1778(antitoxin) |
Location | 1091127..1091881 | Replicon | chromosome |
Accession | NZ_CP009885 | ||
Organism | Xylella fastidiosa strain Hib4 |
Toxin (Protein)
Gene name | tacT | Uniprot ID | - |
Locus tag | XFHB_RS05215 | Protein ID | WP_088577922.1 |
Coordinates | 1091396..1091881 (+) | Length | 162 a.a. |
Antitoxin (Protein)
Gene name | ataR | Uniprot ID | - |
Locus tag | XFHB_RS05210 | Protein ID | WP_088577921.1 |
Coordinates | 1091127..1091399 (+) | Length | 91 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
XFHB_RS05165 | 1086551..1086811 | + | 261 | WP_023906425.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | - |
XFHB_RS05170 | 1086798..1087079 | + | 282 | WP_023906426.1 | type II toxin-antitoxin system YafQ family toxin | - |
XFHB_RS05180 | 1087476..1088510 | - | 1035 | WP_023906427.1 | serine protease | - |
XFHB_RS05185 | 1088675..1088761 | - | 87 | Protein_942 | transposase | - |
XFHB_RS05190 | 1089248..1089499 | + | 252 | WP_010894487.1 | antitoxin | - |
XFHB_RS05195 | 1089496..1089804 | + | 309 | WP_010894488.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
XFHB_RS14190 | 1089979..1090785 | + | 807 | WP_157293241.1 | hypothetical protein | - |
XFHB_RS14195 | 1090808..1091044 | + | 237 | WP_157293242.1 | hypothetical protein | - |
XFHB_RS05210 | 1091127..1091399 | + | 273 | WP_088577921.1 | DUF1778 domain-containing protein | Antitoxin |
XFHB_RS05215 | 1091396..1091881 | + | 486 | WP_088577922.1 | GNAT family N-acetyltransferase | Toxin |
XFHB_RS05220 | 1092135..1092320 | + | 186 | WP_088577923.1 | hypothetical protein | - |
XFHB_RS05225 | 1092333..1092704 | - | 372 | WP_157293243.1 | hypothetical protein | - |
XFHB_RS05235 | 1093314..1093907 | + | 594 | WP_088577926.1 | hypothetical protein | - |
XFHB_RS05240 | 1093975..1094289 | + | 315 | WP_060871452.1 | hypothetical protein | - |
XFHB_RS05245 | 1094543..1094797 | + | 255 | WP_088577927.1 | plasmid stability protein stbC | - |
XFHB_RS05250 | 1094794..1095219 | + | 426 | WP_088577928.1 | type II toxin-antitoxin system VapC family toxin | - |
XFHB_RS14200 | 1095309..1095488 | - | 180 | Protein_955 | hypothetical protein | - |
XFHB_RS05255 | 1095487..1095852 | - | 366 | Protein_956 | conjugal transfer protein TrbJ | - |
XFHB_RS05260 | 1095958..1096323 | - | 366 | WP_088577929.1 | hypothetical protein | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
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Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 162 a.a. Molecular weight: 17817.56 Da Isoelectric Point: 9.7126
>T50116 WP_088577922.1 NZ_CP009885:1091396-1091881 [Xylella fastidiosa]
VNMQISTPHSLTAAHRLDEFNCGEPSLDDWLKRRALTNHLNGASRTFVVVDANQYVLGYYALAAGSVAHQEATRAIRGNM
PDPVPVMVLGRLAVDTRAQGIRLGAALLKDTVTRVQSIAENVGVRALVVHALNERAKQFYEYYGFRASPMHLMTLMLPIK
F
VNMQISTPHSLTAAHRLDEFNCGEPSLDDWLKRRALTNHLNGASRTFVVVDANQYVLGYYALAAGSVAHQEATRAIRGNM
PDPVPVMVLGRLAVDTRAQGIRLGAALLKDTVTRVQSIAENVGVRALVVHALNERAKQFYEYYGFRASPMHLMTLMLPIK
F
Download Length: 486 bp
>T50116 NZ_CP009885:1091396-1091881 [Xylella fastidiosa]
GTGAATATGCAGATTTCGACACCTCATTCACTCACGGCAGCGCATCGACTCGATGAATTCAATTGCGGTGAGCCATCGCT
GGATGATTGGCTTAAACGACGCGCATTGACCAACCATTTAAACGGGGCCAGCCGGACCTTCGTTGTTGTCGATGCCAACC
AGTACGTGCTTGGGTACTACGCTTTGGCAGCTGGGTCTGTCGCGCATCAAGAGGCCACGCGTGCTATCCGAGGTAATATG
CCTGATCCAGTGCCGGTCATGGTGCTCGGAAGGCTGGCTGTGGATACTCGCGCTCAAGGCATCAGACTCGGTGCGGCCTT
GCTTAAAGATACGGTAACTCGTGTACAGTCCATTGCAGAGAACGTCGGCGTCAGGGCATTGGTAGTGCATGCGTTGAACG
AGCGCGCAAAGCAATTCTACGAGTACTATGGTTTTCGAGCGTCACCAATGCACCTGATGACCTTGATGCTTCCGATTAAA
TTCTAG
GTGAATATGCAGATTTCGACACCTCATTCACTCACGGCAGCGCATCGACTCGATGAATTCAATTGCGGTGAGCCATCGCT
GGATGATTGGCTTAAACGACGCGCATTGACCAACCATTTAAACGGGGCCAGCCGGACCTTCGTTGTTGTCGATGCCAACC
AGTACGTGCTTGGGTACTACGCTTTGGCAGCTGGGTCTGTCGCGCATCAAGAGGCCACGCGTGCTATCCGAGGTAATATG
CCTGATCCAGTGCCGGTCATGGTGCTCGGAAGGCTGGCTGTGGATACTCGCGCTCAAGGCATCAGACTCGGTGCGGCCTT
GCTTAAAGATACGGTAACTCGTGTACAGTCCATTGCAGAGAACGTCGGCGTCAGGGCATTGGTAGTGCATGCGTTGAACG
AGCGCGCAAAGCAATTCTACGAGTACTATGGTTTTCGAGCGTCACCAATGCACCTGATGACCTTGATGCTTCCGATTAAA
TTCTAG
Antitoxin
Download Length: 91 a.a. Molecular weight: 10281.79 Da Isoelectric Point: 4.7419
>AT50116 WP_088577921.1 NZ_CP009885:1091127-1091399 [Xylella fastidiosa]
MRDASINLRAMPEQRDLIDQAANLLGKNRSDFMLEAACERAKAIILDQVFFNLDEERFRQFTVLLDAPQDTNLGLNRLMA
IKAPWSISNT
MRDASINLRAMPEQRDLIDQAANLLGKNRSDFMLEAACERAKAIILDQVFFNLDEERFRQFTVLLDAPQDTNLGLNRLMA
IKAPWSISNT
Download Length: 273 bp
>AT50116 NZ_CP009885:1091127-1091399 [Xylella fastidiosa]
ATGCGCGACGCTTCCATCAACTTACGTGCCATGCCTGAGCAGCGCGACTTGATTGACCAGGCTGCTAATCTATTAGGCAA
GAATCGCTCAGACTTCATGCTAGAAGCTGCGTGCGAGCGTGCGAAAGCAATTATCCTGGATCAAGTCTTTTTTAATCTGG
ACGAAGAGAGGTTCCGGCAATTCACTGTGTTGCTTGATGCGCCACAAGACACCAATCTCGGCCTTAATCGCCTGATGGCA
ATTAAGGCTCCGTGGAGCATCAGCAATACGTGA
ATGCGCGACGCTTCCATCAACTTACGTGCCATGCCTGAGCAGCGCGACTTGATTGACCAGGCTGCTAATCTATTAGGCAA
GAATCGCTCAGACTTCATGCTAGAAGCTGCGTGCGAGCGTGCGAAAGCAATTATCCTGGATCAAGTCTTTTTTAATCTGG
ACGAAGAGAGGTTCCGGCAATTCACTGTGTTGCTTGATGCGCCACAAGACACCAATCTCGGCCTTAATCGCCTGATGGCA
ATTAAGGCTCCGTGGAGCATCAGCAATACGTGA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Structures
Toxin
Source | ID | Structure |
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Antitoxin
Source | ID | Structure |
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