Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3262342..3262487 | Replicon | chromosome |
| Accession | NZ_CP009876 | ||
| Organism | Klebsiella pneumoniae subsp. pneumoniae strain KPNIH31 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3262349..3262451 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3262342..3262487 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KPNIH31_RS16165 | 3257874..3259307 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| KPNIH31_RS16170 | 3259423..3259662 | + | 240 | WP_002911393.1 | YebV family protein | - |
| KPNIH31_RS16175 | 3259760..3259951 | + | 192 | WP_002911395.1 | YebW family protein | - |
| KPNIH31_RS16180 | 3259948..3260601 | - | 654 | WP_009484457.1 | protein-serine/threonine phosphatase | - |
| KPNIH31_RS16185 | 3260758..3261726 | + | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| KPNIH31_RS29370 | 3261831..3261974 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 3262342..3262487 | + | 146 | - | - | Antitoxin |
| - | 3262349..3262451 | - | 103 | - | - | Toxin |
| KPNIH31_RS16195 | 3262610..3262948 | - | 339 | WP_002911404.1 | YebY family protein | - |
| KPNIH31_RS16200 | 3262965..3263834 | - | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| KPNIH31_RS16205 | 3263838..3264212 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| KPNIH31_RS16210 | 3264325..3264555 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| KPNIH31_RS16215 | 3264634..3265293 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| KPNIH31_RS16220 | 3265297..3267357 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T50099 NZ_CP009876:c3262451-3262349 [Klebsiella pneumoniae subsp. pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT50099 NZ_CP009876:3262342-3262487 [Klebsiella pneumoniae subsp. pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
