Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2596608..2596702 | Replicon | chromosome |
| Accession | NZ_CP009844 | ||
| Organism | Yersinia pestis strain Dodson | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2596609..2596702 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2596608..2596702 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CH61_RS12940 | 2591801..2593879 | - | 2079 | WP_002211100.1 | flagellar biosynthesis protein FlhA | - |
| CH61_RS12945 | 2593879..2595039 | - | 1161 | WP_002211099.1 | flagellar type III secretion system protein FlhB | - |
| CH61_RS12950 | 2595571..2596029 | + | 459 | WP_002211098.1 | hypothetical protein | - |
| CH61_RS12955 | 2596023..2596349 | + | 327 | WP_002211097.1 | DUF1493 family protein | - |
| - | 2596608..2596702 | + | 95 | - | - | Antitoxin |
| - | 2596609..2596702 | - | 94 | - | - | Toxin |
| CH61_RS12965 | 2596872..2597213 | - | 342 | WP_002211095.1 | YebY family protein | - |
| CH61_RS12970 | 2597310..2598194 | - | 885 | WP_002211094.1 | copper homeostasis membrane protein CopD | - |
| CH61_RS12975 | 2598197..2598583 | - | 387 | WP_002211093.1 | CopC domain-containing protein YobA | - |
| CH61_RS12980 | 2598980..2599489 | - | 510 | WP_002211092.1 | non-heme ferritin | - |
| CH61_RS12985 | 2599890..2600120 | + | 231 | WP_002211091.1 | DNA polymerase III subunit theta | - |
| CH61_RS12990 | 2600180..2601130 | - | 951 | WP_002211090.1 | prolyl aminopeptidase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 94 bp
>T49963 NZ_CP009844:c2596702-2596609 [Yersinia pestis]
TAAGCCTACATTAATACCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATCAGGAATCGTA
TTCGGTCTTTTTTT
TAAGCCTACATTAATACCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATCAGGAATCGTA
TTCGGTCTTTTTTT
Antitoxin
Download Length: 95 bp
>AT49963 NZ_CP009844:2596608-2596702 [Yersinia pestis]
TAAAAAAAGACCGAATACGATTCCTGATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGT
ATTAATGTAGGCTTA
TAAAAAAAGACCGAATACGATTCCTGATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGT
ATTAATGTAGGCTTA
