Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 4468949..4469043 Replicon chromosome
Accession NZ_CP009840
Organism Yersinia pestis A1122

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 4468949..4469042 (+)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 4468949..4469043 (-)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
CH57_RS20760 4464521..4465471 + 951 WP_002211090.1 prolyl aminopeptidase -
CH57_RS20765 4465531..4465761 - 231 WP_002211091.1 DNA polymerase III subunit theta -
CH57_RS20770 4466162..4466671 + 510 WP_002211092.1 non-heme ferritin -
CH57_RS20775 4467068..4467454 + 387 WP_002211093.1 CopC domain-containing protein YobA -
CH57_RS20780 4467457..4468341 + 885 WP_002211094.1 copper homeostasis membrane protein CopD -
CH57_RS20785 4468438..4468779 + 342 WP_002211095.1 YebY family protein -
- 4468949..4469042 + 94 - - Toxin
- 4468949..4469043 - 95 - - Antitoxin
CH57_RS20795 4469302..4469628 - 327 WP_002211097.1 DUF1493 family protein -
CH57_RS20800 4469622..4470080 - 459 WP_002211098.1 hypothetical protein -
CH57_RS20805 4470612..4471772 + 1161 WP_002211099.1 flagellar type III secretion system protein FlhB -
CH57_RS20810 4471772..4473850 + 2079 WP_002211100.1 flagellar biosynthesis protein FlhA -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 94 bp

>T49950 NZ_CP009840:4468949-4469042 [Yersinia pestis A1122]
TAAGCCTACATTAATACCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATCAGGAATCGTA
TTCGGTCTTTTTTT

Antitoxin


Download         Length: 95 bp

>AT49950 NZ_CP009840:c4469043-4468949 [Yersinia pestis A1122]
TAAAAAAAGACCGAATACGATTCCTGATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGT
ATTAATGTAGGCTTA

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References