Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4416749..4416867 | Replicon | chromosome |
| Accession | NZ_CP009838 | ||
| Organism | Yersinia enterocolitica strain 2516-87 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4416751..4416845 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4416749..4416867 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CH48_RS20255 | 4412577..4413029 | + | 453 | WP_005163578.1 | phage tail protein | - |
| CH48_RS20260 | 4413026..4414168 | + | 1143 | WP_013649998.1 | phage late control D family protein | - |
| CH48_RS22025 | 4414261..4414482 | + | 222 | WP_071822716.1 | DNA-binding transcriptional regulator | - |
| CH48_RS20265 | 4414567..4415382 | - | 816 | WP_005163581.1 | hypothetical protein | - |
| CH48_RS20270 | 4415623..4416693 | + | 1071 | WP_201773596.1 | tyrosine-type recombinase/integrase | - |
| - | 4416749..4416867 | + | 119 | - | - | Antitoxin |
| - | 4416751..4416845 | - | 95 | - | - | Toxin |
| CH48_RS20275 | 4417020..4417361 | - | 342 | WP_005163587.1 | YebY family protein | - |
| CH48_RS20280 | 4417458..4418342 | - | 885 | WP_005163602.1 | copper homeostasis membrane protein CopD | - |
| CH48_RS20285 | 4418344..4418730 | - | 387 | WP_005170441.1 | CopC domain-containing protein YobA | - |
| CH48_RS20290 | 4419123..4419632 | - | 510 | WP_013650000.1 | non-heme ferritin | - |
| CH48_RS20295 | 4420016..4420249 | + | 234 | WP_004389928.1 | DNA polymerase III subunit theta | - |
| CH48_RS20300 | 4420299..4421255 | - | 957 | WP_020283091.1 | prolyl aminopeptidase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 4407406..4422427 | 15021 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 95 bp
>T49938 NZ_CP009838:c4416845-4416751 [Yersinia enterocolitica]
AACAAGCCTACGTTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATCGT
ATTCGGTCTTTTTTT
AACAAGCCTACGTTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATCGT
ATTCGGTCTTTTTTT
Antitoxin
Download Length: 119 bp
>AT49938 NZ_CP009838:4416749-4416867 [Yersinia enterocolitica]
ATAAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAACGTAGGCTTGTTCAGCCATACTCTTTAAGAGTAG
ATAAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAACGTAGGCTTGTTCAGCCATACTCTTTAAGAGTAG
