Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type II Classification (family/domain) pasABC/RelE-HTH
Location 855992..856478 Replicon chromosome
Accession NZ_CP009823
Organism Xylella fastidiosa strain J1a12

Toxin (Protein)


Gene name pasB Uniprot ID -
Locus tag OY18_RS04100 Protein ID WP_060871810.1
Coordinates 855992..856267 (-) Length 92 a.a.

Antitoxin (Protein)


Gene name pasA Uniprot ID A0A1L2AR28
Locus tag OY18_RS04105 Protein ID WP_031336679.1
Coordinates 856251..856478 (-) Length 76 a.a.

Genomic Context


Locus tag Coordinates Strand Size (bp) Protein ID Product Description
OY18_RS04070 (OY18_03805) 852146..852583 + 438 WP_010894081.1 DUF3277 family protein -
OY18_RS04075 (OY18_03810) 852580..853002 + 423 WP_060872210.1 putative phage tail assembly chaperone -
OY18_RS04080 (OY18_03815) 853150..855039 + 1890 WP_060872211.1 hypothetical protein -
OY18_RS04085 855366..855542 + 177 WP_088569668.1 Blp family class II bacteriocin -
OY18_RS04090 855576..855764 + 189 WP_081089780.1 hypothetical protein -
OY18_RS04095 855769..855939 - 171 WP_081089781.1 antitoxin -
OY18_RS04100 (OY18_03825) 855992..856267 - 276 WP_060871810.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
OY18_RS04105 (OY18_03830) 856251..856478 - 228 WP_031336679.1 DUF6290 family protein Antitoxin
OY18_RS04110 (OY18_03835) 856591..857361 + 771 WP_088569669.1 hypothetical protein -
OY18_RS04115 (OY18_03840) 857361..857678 + 318 WP_069107095.1 hypothetical protein -
OY18_RS04120 (OY18_03845) 857675..858505 + 831 WP_060872216.1 hypothetical protein -
OY18_RS04125 (OY18_03850) 858502..859323 + 822 WP_229926333.1 Gp138 family membrane-puncturing spike protein -
OY18_RS14910 859307..859492 + 186 WP_229926334.1 hypothetical protein -
OY18_RS04135 (OY18_03860) 859503..859808 - 306 WP_060872107.1 putative addiction module antidote protein -
OY18_RS04140 (OY18_03865) 859805..860107 - 303 WP_060872108.1 type II toxin-antitoxin system RelE/ParE family toxin -
OY18_RS04145 (OY18_03870) 860206..861351 + 1146 WP_060872109.1 baseplate J/gp47 family protein -

Associated MGEs


MGE
detail
Similar
MGEs
Relative
position
MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Prophage - - 790250..953208 162958


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.



Sequences


Toxin        


Download         Length: 92 a.a.        Molecular weight: 10552.23 Da        Isoelectric Point: 10.3419

>T49874 WP_060871810.1 NZ_CP009823:c856267-855992 [Xylella fastidiosa]
MAWTIDYTDTAKQQLRKLDKHMARRIVDFMDERIAGLENPRSSGKALTGPLGGFWRYRVGDFRVVCAIQDSVLRVLVVRV
GHRGEIYRREC

Download         Length: 276 bp

>T49874 NZ_CP009823:c856267-855992 [Xylella fastidiosa]
TTGGCCTGGACGATTGATTACACCGACACGGCCAAGCAGCAGTTACGCAAGCTCGACAAGCACATGGCGCGGCGCATTGT
CGATTTCATGGATGAGCGCATCGCCGGACTAGAAAACCCACGCAGCAGTGGTAAAGCATTAACCGGACCACTTGGCGGCT
TTTGGCGTTATCGTGTTGGTGATTTCCGGGTCGTCTGCGCCATTCAAGATAGCGTTTTGCGCGTCCTTGTGGTGCGTGTT
GGTCACCGGGGTGAGATTTACCGACGAGAATGCTAG

Antitoxin


Download         Length: 76 a.a.        Molecular weight: 8691.73 Da        Isoelectric Point: 5.0958

>AT49874 WP_031336679.1 NZ_CP009823:c856478-856251 [Xylella fastidiosa]
MATSIRLSPEMEQRLNYLASHTGRTKAYYLREIIEHGIEEMEDYYLAADVLERVRHGQEQVHSAADVRKTLGLDD

Download         Length: 228 bp

>AT49874 NZ_CP009823:c856478-856251 [Xylella fastidiosa]
ATGGCGACTTCGATTCGCCTCTCTCCTGAAATGGAGCAAAGGCTGAACTATCTTGCCTCCCATACGGGACGCACAAAGGC
TTACTACCTGCGTGAAATCATTGAGCATGGCATTGAGGAAATGGAGGATTACTACCTTGCTGCCGATGTGTTGGAGCGTG
TCCGTCATGGACAAGAACAGGTGCATTCTGCTGCCGACGTGAGAAAAACGCTTGGCCTGGACGATTGA

Similar Proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures


Toxin

Source ID Structure


Antitoxin

Source ID Structure
AlphaFold DB A0A1L2AR28

References