Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | pasABC/RelE-HTH |
Location | 855992..856478 | Replicon | chromosome |
Accession | NZ_CP009823 | ||
Organism | Xylella fastidiosa strain J1a12 |
Toxin (Protein)
Gene name | pasB | Uniprot ID | - |
Locus tag | OY18_RS04100 | Protein ID | WP_060871810.1 |
Coordinates | 855992..856267 (-) | Length | 92 a.a. |
Antitoxin (Protein)
Gene name | pasA | Uniprot ID | A0A1L2AR28 |
Locus tag | OY18_RS04105 | Protein ID | WP_031336679.1 |
Coordinates | 856251..856478 (-) | Length | 76 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
OY18_RS04070 (OY18_03805) | 852146..852583 | + | 438 | WP_010894081.1 | DUF3277 family protein | - |
OY18_RS04075 (OY18_03810) | 852580..853002 | + | 423 | WP_060872210.1 | putative phage tail assembly chaperone | - |
OY18_RS04080 (OY18_03815) | 853150..855039 | + | 1890 | WP_060872211.1 | hypothetical protein | - |
OY18_RS04085 | 855366..855542 | + | 177 | WP_088569668.1 | Blp family class II bacteriocin | - |
OY18_RS04090 | 855576..855764 | + | 189 | WP_081089780.1 | hypothetical protein | - |
OY18_RS04095 | 855769..855939 | - | 171 | WP_081089781.1 | antitoxin | - |
OY18_RS04100 (OY18_03825) | 855992..856267 | - | 276 | WP_060871810.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
OY18_RS04105 (OY18_03830) | 856251..856478 | - | 228 | WP_031336679.1 | DUF6290 family protein | Antitoxin |
OY18_RS04110 (OY18_03835) | 856591..857361 | + | 771 | WP_088569669.1 | hypothetical protein | - |
OY18_RS04115 (OY18_03840) | 857361..857678 | + | 318 | WP_069107095.1 | hypothetical protein | - |
OY18_RS04120 (OY18_03845) | 857675..858505 | + | 831 | WP_060872216.1 | hypothetical protein | - |
OY18_RS04125 (OY18_03850) | 858502..859323 | + | 822 | WP_229926333.1 | Gp138 family membrane-puncturing spike protein | - |
OY18_RS14910 | 859307..859492 | + | 186 | WP_229926334.1 | hypothetical protein | - |
OY18_RS04135 (OY18_03860) | 859503..859808 | - | 306 | WP_060872107.1 | putative addiction module antidote protein | - |
OY18_RS04140 (OY18_03865) | 859805..860107 | - | 303 | WP_060872108.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
OY18_RS04145 (OY18_03870) | 860206..861351 | + | 1146 | WP_060872109.1 | baseplate J/gp47 family protein | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|---|---|---|---|---|---|---|
- | inside | Prophage | - | - | 790250..953208 | 162958 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 92 a.a. Molecular weight: 10552.23 Da Isoelectric Point: 10.3419
>T49874 WP_060871810.1 NZ_CP009823:c856267-855992 [Xylella fastidiosa]
MAWTIDYTDTAKQQLRKLDKHMARRIVDFMDERIAGLENPRSSGKALTGPLGGFWRYRVGDFRVVCAIQDSVLRVLVVRV
GHRGEIYRREC
MAWTIDYTDTAKQQLRKLDKHMARRIVDFMDERIAGLENPRSSGKALTGPLGGFWRYRVGDFRVVCAIQDSVLRVLVVRV
GHRGEIYRREC
Download Length: 276 bp
>T49874 NZ_CP009823:c856267-855992 [Xylella fastidiosa]
TTGGCCTGGACGATTGATTACACCGACACGGCCAAGCAGCAGTTACGCAAGCTCGACAAGCACATGGCGCGGCGCATTGT
CGATTTCATGGATGAGCGCATCGCCGGACTAGAAAACCCACGCAGCAGTGGTAAAGCATTAACCGGACCACTTGGCGGCT
TTTGGCGTTATCGTGTTGGTGATTTCCGGGTCGTCTGCGCCATTCAAGATAGCGTTTTGCGCGTCCTTGTGGTGCGTGTT
GGTCACCGGGGTGAGATTTACCGACGAGAATGCTAG
TTGGCCTGGACGATTGATTACACCGACACGGCCAAGCAGCAGTTACGCAAGCTCGACAAGCACATGGCGCGGCGCATTGT
CGATTTCATGGATGAGCGCATCGCCGGACTAGAAAACCCACGCAGCAGTGGTAAAGCATTAACCGGACCACTTGGCGGCT
TTTGGCGTTATCGTGTTGGTGATTTCCGGGTCGTCTGCGCCATTCAAGATAGCGTTTTGCGCGTCCTTGTGGTGCGTGTT
GGTCACCGGGGTGAGATTTACCGACGAGAATGCTAG
Antitoxin
Download Length: 76 a.a. Molecular weight: 8691.73 Da Isoelectric Point: 5.0958
>AT49874 WP_031336679.1 NZ_CP009823:c856478-856251 [Xylella fastidiosa]
MATSIRLSPEMEQRLNYLASHTGRTKAYYLREIIEHGIEEMEDYYLAADVLERVRHGQEQVHSAADVRKTLGLDD
MATSIRLSPEMEQRLNYLASHTGRTKAYYLREIIEHGIEEMEDYYLAADVLERVRHGQEQVHSAADVRKTLGLDD
Download Length: 228 bp
>AT49874 NZ_CP009823:c856478-856251 [Xylella fastidiosa]
ATGGCGACTTCGATTCGCCTCTCTCCTGAAATGGAGCAAAGGCTGAACTATCTTGCCTCCCATACGGGACGCACAAAGGC
TTACTACCTGCGTGAAATCATTGAGCATGGCATTGAGGAAATGGAGGATTACTACCTTGCTGCCGATGTGTTGGAGCGTG
TCCGTCATGGACAAGAACAGGTGCATTCTGCTGCCGACGTGAGAAAAACGCTTGGCCTGGACGATTGA
ATGGCGACTTCGATTCGCCTCTCTCCTGAAATGGAGCAAAGGCTGAACTATCTTGCCTCCCATACGGGACGCACAAAGGC
TTACTACCTGCGTGAAATCATTGAGCATGGCATTGAGGAAATGGAGGATTACTACCTTGCTGCCGATGTGTTGGAGCGTG
TCCGTCATGGACAAGAACAGGTGCATTCTGCTGCCGACGTGAGAAAAACGCTTGGCCTGGACGATTGA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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