Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | vapBC/- |
| Location | 1297653..1298900 | Replicon | chromosome |
| Accession | NZ_CP009799 | ||
| Organism | Burkholderia ambifaria AMMD | ||
Toxin (Protein)
| Gene name | vapC | Uniprot ID | Q0B7E4 |
| Locus tag | CH72_RS22080 | Protein ID | WP_011659358.1 |
| Coordinates | 1298319..1298900 (+) | Length | 194 a.a. |
Antitoxin (Protein)
| Gene name | vapB | Uniprot ID | - |
| Locus tag | CH72_RS22075 | Protein ID | WP_011659357.1 |
| Coordinates | 1297653..1298210 (+) | Length | 186 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CH72_RS22055 | 1293551..1294186 | + | 636 | WP_011659353.1 | cysteine hydrolase | - |
| CH72_RS22060 | 1294255..1294986 | - | 732 | WP_011659354.1 | ribonuclease T2 | - |
| CH72_RS22065 | 1295168..1296571 | - | 1404 | WP_011659355.1 | hypothetical protein | - |
| CH72_RS22070 | 1296934..1297581 | + | 648 | WP_011659356.1 | hypothetical protein | - |
| CH72_RS22075 | 1297653..1298210 | + | 558 | WP_011659357.1 | helix-turn-helix domain-containing protein | Antitoxin |
| CH72_RS22080 | 1298319..1298900 | + | 582 | WP_011659358.1 | HD domain-containing protein | Toxin |
| CH72_RS22085 | 1298980..1300518 | - | 1539 | WP_011659359.1 | MFS transporter | - |
| CH72_RS22090 | 1300696..1301601 | + | 906 | WP_011659360.1 | LysR family transcriptional regulator | - |
| CH72_RS22095 | 1301663..1302802 | - | 1140 | WP_011659361.1 | enoyl-CoA hydratase/isomerase family protein | - |
| CH72_RS22100 | 1302799..1303590 | - | 792 | WP_011659362.1 | enoyl-CoA hydratase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 194 a.a. Molecular weight: 21455.98 Da Isoelectric Point: 4.8564
>T49849 WP_011659358.1 NZ_CP009799:1298319-1298900 [Burkholderia ambifaria AMMD]
MNLDTIHARLDFLREAERLKDVLRSGHTSTGRRESTAEHSWRLCLMALVFADALPDVDTTKLLKLCVVHDLGEALHGDIP
AIEQAAHPDKSTHERDDLLTLTAGLDRALRDEIVALWDEYEAAESPEARAAKALDKLETILQHNQGSNPPDFDYAFNLGY
GRRYTDATPLFGAIRAIVDADTQRRIDARGDGA
MNLDTIHARLDFLREAERLKDVLRSGHTSTGRRESTAEHSWRLCLMALVFADALPDVDTTKLLKLCVVHDLGEALHGDIP
AIEQAAHPDKSTHERDDLLTLTAGLDRALRDEIVALWDEYEAAESPEARAAKALDKLETILQHNQGSNPPDFDYAFNLGY
GRRYTDATPLFGAIRAIVDADTQRRIDARGDGA
Download Length: 582 bp
>T49849 NZ_CP009799:1298319-1298900 [Burkholderia ambifaria AMMD]
ATGAACCTCGACACGATCCACGCGCGGCTCGATTTCCTGCGCGAAGCCGAACGCCTGAAAGACGTGCTGCGCAGCGGCCA
CACGTCGACGGGCCGCCGCGAAAGCACGGCGGAGCACAGCTGGCGACTGTGCCTGATGGCGCTCGTGTTCGCCGATGCGC
TGCCCGACGTCGACACGACGAAGCTGCTGAAACTGTGCGTCGTCCACGATCTCGGCGAAGCGCTGCACGGCGACATCCCC
GCGATCGAGCAGGCCGCGCATCCGGACAAGAGCACGCATGAACGCGACGACCTGCTGACGCTCACGGCCGGGCTCGATCG
CGCGCTGCGCGACGAGATCGTCGCGCTGTGGGACGAATACGAGGCGGCCGAATCACCGGAAGCGCGCGCCGCGAAGGCGC
TCGACAAGCTCGAGACGATTCTGCAGCACAACCAGGGCAGCAATCCGCCCGACTTCGACTACGCGTTCAATCTCGGCTAC
GGGCGGCGCTACACCGACGCGACGCCGCTGTTCGGCGCGATCCGCGCGATCGTCGACGCGGACACACAACGCAGGATCGA
CGCACGCGGCGACGGCGCGTAA
ATGAACCTCGACACGATCCACGCGCGGCTCGATTTCCTGCGCGAAGCCGAACGCCTGAAAGACGTGCTGCGCAGCGGCCA
CACGTCGACGGGCCGCCGCGAAAGCACGGCGGAGCACAGCTGGCGACTGTGCCTGATGGCGCTCGTGTTCGCCGATGCGC
TGCCCGACGTCGACACGACGAAGCTGCTGAAACTGTGCGTCGTCCACGATCTCGGCGAAGCGCTGCACGGCGACATCCCC
GCGATCGAGCAGGCCGCGCATCCGGACAAGAGCACGCATGAACGCGACGACCTGCTGACGCTCACGGCCGGGCTCGATCG
CGCGCTGCGCGACGAGATCGTCGCGCTGTGGGACGAATACGAGGCGGCCGAATCACCGGAAGCGCGCGCCGCGAAGGCGC
TCGACAAGCTCGAGACGATTCTGCAGCACAACCAGGGCAGCAATCCGCCCGACTTCGACTACGCGTTCAATCTCGGCTAC
GGGCGGCGCTACACCGACGCGACGCCGCTGTTCGGCGCGATCCGCGCGATCGTCGACGCGGACACACAACGCAGGATCGA
CGCACGCGGCGACGGCGCGTAA
Antitoxin
Download Length: 186 a.a. Molecular weight: 20252.28 Da Isoelectric Point: 11.0874
>AT49849 WP_011659357.1 NZ_CP009799:1297653-1298210 [Burkholderia ambifaria AMMD]
MTTSPLHTPPLGPQLKRWRTLRRVKQSHAAELFGVAQSTISRWEAGIQQMSPDERATAERLLAARLDSAGDHALARLIAS
STARMHLVCDLTHRLLACAPSRAAEFSRPLPALLGTSLWRYASPEIVRMEAALDPLGWHDRAGPPSVEFATGINASRVVP
IRGSTCRWTRMTLSDGSAARLVETL
MTTSPLHTPPLGPQLKRWRTLRRVKQSHAAELFGVAQSTISRWEAGIQQMSPDERATAERLLAARLDSAGDHALARLIAS
STARMHLVCDLTHRLLACAPSRAAEFSRPLPALLGTSLWRYASPEIVRMEAALDPLGWHDRAGPPSVEFATGINASRVVP
IRGSTCRWTRMTLSDGSAARLVETL
Download Length: 558 bp
>AT49849 NZ_CP009799:1297653-1298210 [Burkholderia ambifaria AMMD]
ATGACGACCTCGCCGCTTCACACCCCGCCGCTCGGCCCGCAACTCAAGCGCTGGCGCACGCTGCGCCGCGTGAAGCAGAG
CCATGCAGCCGAGCTGTTCGGCGTCGCGCAATCGACAATCTCGCGCTGGGAAGCCGGCATCCAGCAGATGTCGCCCGACG
AGCGCGCAACGGCCGAGCGGCTGCTTGCCGCGCGTCTCGATTCGGCCGGCGACCACGCGCTCGCGCGGCTGATCGCGAGC
AGCACGGCCCGCATGCATCTCGTGTGCGACCTCACGCATCGCTTGCTCGCCTGCGCGCCGTCGCGCGCGGCAGAGTTCTC
GCGGCCGCTGCCGGCCTTGCTCGGTACCTCGCTGTGGCGCTATGCGTCGCCGGAAATCGTGCGCATGGAAGCCGCGCTCG
ACCCGCTCGGCTGGCACGATCGCGCGGGGCCGCCGAGCGTCGAATTCGCGACCGGCATCAATGCGTCGCGCGTCGTGCCG
ATCCGCGGCAGCACCTGCCGGTGGACGCGCATGACGCTGTCGGACGGCTCCGCCGCGCGGCTCGTCGAAACGCTGTAG
ATGACGACCTCGCCGCTTCACACCCCGCCGCTCGGCCCGCAACTCAAGCGCTGGCGCACGCTGCGCCGCGTGAAGCAGAG
CCATGCAGCCGAGCTGTTCGGCGTCGCGCAATCGACAATCTCGCGCTGGGAAGCCGGCATCCAGCAGATGTCGCCCGACG
AGCGCGCAACGGCCGAGCGGCTGCTTGCCGCGCGTCTCGATTCGGCCGGCGACCACGCGCTCGCGCGGCTGATCGCGAGC
AGCACGGCCCGCATGCATCTCGTGTGCGACCTCACGCATCGCTTGCTCGCCTGCGCGCCGTCGCGCGCGGCAGAGTTCTC
GCGGCCGCTGCCGGCCTTGCTCGGTACCTCGCTGTGGCGCTATGCGTCGCCGGAAATCGTGCGCATGGAAGCCGCGCTCG
ACCCGCTCGGCTGGCACGATCGCGCGGGGCCGCCGAGCGTCGAATTCGCGACCGGCATCAATGCGTCGCGCGTCGTGCCG
ATCCGCGGCAGCACCTGCCGGTGGACGCGCATGACGCTGTCGGACGGCTCCGCCGCGCGGCTCGTCGAAACGCTGTAG
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|