Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 3318014..3318108 Replicon chromosome
Accession NZ_CP009792
Organism Yersinia pseudotuberculosis YPIII

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 3318015..3318108 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 3318014..3318108 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
BZ22_RS15210 3313201..3315279 - 2079 WP_012304223.1 flagellar biosynthesis protein FlhA -
BZ22_RS15215 3315279..3316439 - 1161 WP_002211099.1 flagellar type III secretion system protein FlhB -
BZ22_RS15220 3316971..3317435 + 465 WP_011192280.1 hypothetical protein -
BZ22_RS15225 3317429..3317755 + 327 WP_011192279.1 DUF1493 family protein -
- 3318014..3318108 + 95 - - Antitoxin
- 3318015..3318108 - 94 - - Toxin
BZ22_RS15235 3318278..3318619 - 342 WP_002211095.1 YebY family protein -
BZ22_RS15240 3318716..3319600 - 885 WP_012304224.1 copper homeostasis membrane protein CopD -
BZ22_RS15245 3319603..3319989 - 387 WP_002211093.1 CopC domain-containing protein YobA -
BZ22_RS15250 3320368..3320877 - 510 WP_002211092.1 non-heme ferritin -
BZ22_RS15255 3321278..3321508 + 231 WP_002211091.1 DNA polymerase III subunit theta -
BZ22_RS15260 3321568..3322518 - 951 WP_012304225.1 prolyl aminopeptidase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 94 bp

>T49829 NZ_CP009792:c3318108-3318015 [Yersinia pseudotuberculosis YPIII]
TAAGCCTACATTAATACCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATCAGGAATCGTA
TTCGGTCTTTTTTT

Antitoxin


Download         Length: 95 bp

>AT49829 NZ_CP009792:3318014-3318108 [Yersinia pseudotuberculosis YPIII]
TAAAAAAAGACCGAATACGATTCCTGATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGT
ATTAATGTAGGCTTA

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References