Detailed information of TA system TA049792

Bioinformatically predicted

Overview

TA module

• Type: VIII
• Classification (family/domain): SdsR-RyeA/-
• Location: 1904832..1905103
• Replicon: chromosome
• Accession: NZ_CP009789
• Organism: Escherichia coli K-12 strain K-12 ER3413

Toxin (RNA)

Gene name	SdsR
Locus tag	-
Coordinates	1904870..1904973 (-)

Antitoxin (RNA)

Gene name	RyeA
Locus tag	-
Coordinates	1904832..1905103 (+)

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
ER3413_RS09515	1901989..1903428	+	1440	Protein_1820	16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF	-
ER3413_RS09520	1903546..1903782	+	237	WP_001295499.1	DUF1480 family protein	-
ER3413_RS09525	1903887..1904078	+	192	WP_000457842.1	YebW family protein	-
ER3413_RS09530	1904079..1904735	-	657	WP_000812724.1	protein-serine/threonine phosphatase	-
-	1904832..1905103	+	272	-	-	Antitoxin
-	1904870..1904973	-	104	-	-	Toxin
ER3413_RS09540	1905131..1905472	-	342	WP_000976476.1	YebY family protein	-
ER3413_RS09545	1905485..1906357	-	873	WP_000879289.1	copper homeostasis membrane protein CopD	-
ER3413_RS09550	1906361..1906735	-	375	WP_000168747.1	CopC domain-containing protein YobA	-
ER3413_RS09555	1906874..1907104	+	231	WP_000916763.1	DNA polymerase III subunit theta	-
ER3413_RS09560	1907206..1907862	+	657	WP_000011658.1	carbon-nitrogen hydrolase family protein	-
ER3413_RS09565	1907886..1908548	+	663	WP_000944256.1	exodeoxyribonuclease X	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Sequences

Toxin

Nucleotide

• Length: 104 bp

>T49792 NZ_CP009789:c1904973-1904870 [Escherichia coli K-12]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT

Antitoxin

Nucleotide

• Length: 272 bp

>AT49792 NZ_CP009789:1904832-1905103 [Escherichia coli K-12]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT

Structures

Antitoxin

Antitoxin