Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1473386..1473480 | Replicon | chromosome |
| Accession | NZ_CP009786 | ||
| Organism | Yersinia pseudotuberculosis strain | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1473386..1473479 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1473386..1473480 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BZ23_RS06615 | 1468960..1469910 | + | 951 | WP_011192157.1 | prolyl aminopeptidase | - |
| BZ23_RS06620 | 1469970..1470200 | - | 231 | WP_002211091.1 | DNA polymerase III subunit theta | - |
| BZ23_RS06625 | 1470601..1471110 | + | 510 | WP_002211092.1 | non-heme ferritin | - |
| BZ23_RS06630 | 1471505..1471891 | + | 387 | WP_002211093.1 | CopC domain-containing protein YobA | - |
| BZ23_RS06635 | 1471894..1472778 | + | 885 | WP_012304224.1 | copper homeostasis membrane protein CopD | - |
| BZ23_RS06640 | 1472875..1473216 | + | 342 | WP_002211095.1 | YebY family protein | - |
| - | 1473386..1473479 | + | 94 | - | - | Toxin |
| - | 1473386..1473480 | - | 95 | - | - | Antitoxin |
| BZ23_RS06650 | 1473739..1474065 | - | 327 | WP_002211097.1 | DUF1493 family protein | - |
| BZ23_RS06660 | 1474284..1475492 | + | 1209 | WP_002209743.1 | IS256 family transposase | - |
| BZ23_RS06665 | 1475436..1475840 | - | 405 | Protein_1262 | hypothetical protein | - |
| BZ23_RS06670 | 1476257..1477231 | - | 975 | WP_012413651.1 | hypothetical protein | - |
| BZ23_RS06675 | 1477253..1477693 | - | 441 | WP_024063381.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | flank | IS/Tn | - | - | 1474284..1475492 | 1208 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 94 bp
>T49751 NZ_CP009786:1473386-1473479 [Yersinia pseudotuberculosis]
TAAGCCTACATTAATACCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATCAGGAATCGTA
TTCGGTCTTTTTTT
TAAGCCTACATTAATACCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATCAGGAATCGTA
TTCGGTCTTTTTTT
Antitoxin
Download Length: 95 bp
>AT49751 NZ_CP009786:c1473480-1473386 [Yersinia pseudotuberculosis]
TAAAAAAAGACCGAATACGATTCCTGATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGT
ATTAATGTAGGCTTA
TAAAAAAAGACCGAATACGATTCCTGATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGT
ATTAATGTAGGCTTA
