Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 3638889..3638983 Replicon chromosome
Accession NZ_CP009785
Organism Yersinia pestis strain El Dorado

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 3638890..3638983 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 3638889..3638983 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
CH46_RS18125 3634082..3636160 - 2079 WP_002211100.1 flagellar biosynthesis protein FlhA -
CH46_RS18130 3636160..3637320 - 1161 WP_002211099.1 flagellar type III secretion system protein FlhB -
CH46_RS18135 3637852..3638310 + 459 WP_002211098.1 hypothetical protein -
CH46_RS18140 3638304..3638630 + 327 WP_002211097.1 DUF1493 family protein -
- 3638889..3638983 + 95 - - Antitoxin
- 3638890..3638983 - 94 - - Toxin
CH46_RS18150 3639153..3639494 - 342 WP_002211095.1 YebY family protein -
CH46_RS18155 3639591..3640475 - 885 WP_002211094.1 copper homeostasis membrane protein CopD -
CH46_RS18160 3640478..3640864 - 387 WP_002211093.1 CopC domain-containing protein YobA -
CH46_RS18165 3641261..3641770 - 510 WP_002211092.1 non-heme ferritin -
CH46_RS18170 3642171..3642401 + 231 WP_002211091.1 DNA polymerase III subunit theta -
CH46_RS18175 3642461..3643411 - 951 WP_002211090.1 prolyl aminopeptidase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 94 bp

>T49742 NZ_CP009785:c3638983-3638890 [Yersinia pestis]
TAAGCCTACATTAATACCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATCAGGAATCGTA
TTCGGTCTTTTTTT

Antitoxin


Download         Length: 95 bp

>AT49742 NZ_CP009785:3638889-3638983 [Yersinia pestis]
TAAAAAAAGACCGAATACGATTCCTGATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGT
ATTAATGTAGGCTTA

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References