Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1259190..1259284 | Replicon | chromosome |
| Accession | NZ_CP009780 | ||
| Organism | Yersinia pseudotuberculosis PB1/+ | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1259190..1259283 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1259190..1259284 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BZ16_RS06020 | 1254780..1255730 | + | 951 | WP_011192157.1 | prolyl aminopeptidase | - |
| BZ16_RS06025 | 1255790..1256020 | - | 231 | WP_002211091.1 | DNA polymerase III subunit theta | - |
| BZ16_RS06030 | 1256421..1256930 | + | 510 | WP_002211092.1 | non-heme ferritin | - |
| BZ16_RS06035 | 1257309..1257695 | + | 387 | WP_002211093.1 | CopC domain-containing protein YobA | - |
| BZ16_RS06040 | 1257698..1258582 | + | 885 | WP_012304224.1 | copper homeostasis membrane protein CopD | - |
| BZ16_RS06045 | 1258679..1259020 | + | 342 | WP_002211095.1 | YebY family protein | - |
| - | 1259190..1259283 | + | 94 | - | - | Toxin |
| - | 1259190..1259284 | - | 95 | - | - | Antitoxin |
| BZ16_RS06055 | 1259543..1259869 | - | 327 | WP_002211097.1 | DUF1493 family protein | - |
| BZ16_RS06060 | 1260076..1261284 | + | 1209 | WP_002209743.1 | IS256 family transposase | - |
| BZ16_RS06065 | 1261228..1261644 | - | 417 | Protein_1059 | hypothetical protein | - |
| BZ16_RS06070 | 1262061..1263035 | - | 975 | WP_012413651.1 | hypothetical protein | - |
| BZ16_RS23375 | 1263057..1263440 | - | 384 | WP_158499507.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | flank | IS/Tn | - | - | 1260076..1261284 | 1208 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 94 bp
>T49709 NZ_CP009780:1259190-1259283 [Yersinia pseudotuberculosis PB1/+]
TAAGCCTACATTAATACCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATCAGGAATCGTA
TTCGGTCTTTTTTT
TAAGCCTACATTAATACCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATCAGGAATCGTA
TTCGGTCTTTTTTT
Antitoxin
Download Length: 95 bp
>AT49709 NZ_CP009780:c1259284-1259190 [Yersinia pseudotuberculosis PB1/+]
TAAAAAAAGACCGAATACGATTCCTGATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGT
ATTAATGTAGGCTTA
TAAAAAAAGACCGAATACGATTCCTGATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGT
ATTAATGTAGGCTTA
