Detailed information of TA system TA049665

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): relBE/ParE-YafN
• Location: 4775177..4775712
• Replicon: chromosome
• Accession: NZ_CP009769
• Organism: Pectobacterium brasiliense strain BC1

Toxin (Protein)

• Gene name: relE
• Uniprot ID: C6DJA0
• Locus tag: NC16_RS21760
• Protein ID: WP_015842269.1
• Coordinates: 4775425..4775712 (+)
• Length: 96 a.a.

Antitoxin (Protein)

• Gene name: relB
• Uniprot ID: -
• Locus tag: NC16_RS21755
• Protein ID: WP_039501748.1
• Coordinates: 4775177..4775428 (+)
• Length: 84 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• Toxin-antitoxin system, RelE/ParE toxin family (5-84)

Antitoxin

No domain identified.

Sequences

Toxin

Protein

• Length: 96 a.a.
• Molecular weight: 11074.15 Da
• Isoelectric Point: 10.3527

>T49665 WP_015842269.1 NZ_CP009769:4775425-4775712 [Pectobacterium brasiliense]
MSYSVKFREDALKEWLKLDKTIQQQFAKKLKKCCENPHIPSAKLRGMKDCYKIKLRASGFRLVYEVIDDVLIIAVVAVGK
RERSGVYHLASERMR

Nucleotide

• Length: 288 bp

>T49665 NZ_CP009769:4775425-4775712 [Pectobacterium brasiliense]
ATGAGCTATAGCGTCAAATTCAGGGAAGATGCGCTGAAAGAATGGCTCAAGCTCGATAAAACCATCCAGCAGCAATTTGC
CAAAAAACTAAAAAAATGCTGCGAAAATCCCCATATTCCTTCGGCAAAGTTACGAGGGATGAAGGACTGCTACAAAATAA
AGCTCCGAGCATCAGGCTTTCGTTTGGTTTATGAGGTTATTGACGACGTATTGATTATCGCCGTAGTGGCGGTAGGTAAA
CGTGAGCGCAGCGGTGTTTATCATCTGGCGAGTGAGCGAATGAGATAA

Antitoxin

Protein

• Length: 84 a.a.
• Molecular weight: 9161.52 Da
• Isoelectric Point: 4.0637

>AT49665 WP_039501748.1 NZ_CP009769:4775177-4775428 [Pectobacterium brasiliense]
MPNIILSDTTASVSELKKNPMTTVNAGDGLPVAILNRNQPAFYCIPADLYEKMLDALDDQELVKLIGERKNQPLVDVDLD
SFL

Nucleotide

• Length: 252 bp

>AT49665 NZ_CP009769:4775177-4775428 [Pectobacterium brasiliense]
ATGCCGAATATTATATTGAGTGATACCACTGCAAGCGTCAGTGAACTGAAAAAGAACCCAATGACGACAGTCAATGCTGG
CGATGGCCTGCCTGTTGCTATCTTGAACCGCAACCAGCCTGCGTTTTATTGCATTCCTGCGGATCTCTACGAAAAAATGC
TGGATGCGCTGGACGATCAAGAACTGGTTAAGCTAATCGGTGAACGCAAAAACCAACCGCTGGTTGACGTGGATTTGGAT
AGTTTCCTATGA

Structures

Toxin

• AlphaFold DB: A0A3S0XQ75