49664

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type IV Classification (family/domain) sdenTA/AbiEii(toxin)
Location 4698643..4700081 Replicon chromosome
Accession NZ_CP009769
Organism Pectobacterium brasiliense strain BC1

Toxin (Protein)


Gene name sdenT Uniprot ID -
Locus tag NC16_RS21410 Protein ID WP_039498425.1
Coordinates 4698643..4699530 (-) Length 296 a.a.

Antitoxin (Protein)


Gene name sdenA Uniprot ID -
Locus tag NC16_RS21415 Protein ID WP_075278489.1
Coordinates 4699557..4700081 (-) Length 175 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
NC16_RS21390 4694627..4695448 + 822 WP_075278488.1 M55 family metallopeptidase -
NC16_RS21395 4695508..4696455 + 948 WP_039521920.1 isoaspartyl peptidase/L-asparaginase -
NC16_RS21400 4696668..4697576 + 909 WP_014913736.1 LysR family transcriptional regulator -
NC16_RS21405 4697675..4698538 + 864 WP_039278589.1 YicC family protein -
NC16_RS21410 4698643..4699530 - 888 WP_039498425.1 nucleotidyl transferase AbiEii/AbiGii toxin family protein Toxin
NC16_RS21415 4699557..4700081 - 525 WP_075278489.1 hypothetical protein Antitoxin
NC16_RS21420 4700413..4702902 - 2490 WP_075278490.1 restriction endonuclease-like protein -
NC16_RS21425 4702921..4704816 - 1896 WP_157891307.1 AAA family ATPase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Nucleotidyl transferase AbiEii toxin, Type IV TA system

(39-271)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 296 a.a.        Molecular weight: 34285.33 Da        Isoelectric Point: 6.3970

>T49664 WP_039498425.1 NZ_CP009769:c4699530-4698643 [Pectobacterium brasiliense]
MLKQQIRQIVQSNPDYAAVTPVIEKEILHHDIIDVLIKQGVMQRLTFIGGTSLRMCYNSSRLSEDLDFNGGHDFKPSAFE
GLESEIQTYIQNKYETEVWVNKPSGERQGDTVSWKISIVKEANRPDLPRQKMHIDVCAIPSFDIEKRPLINHYDIVVPTE
GILVPVQSLQETLADKLIALAYRARRIKPRDIWDIVWIKQRGIDLSKTLVEKKLTARHKQTDDFRQALSIQLAKLMLQDE
VRDDFNMEMSRFIPKQIKERTLDNPEYWDYVQREVHAITSELLNDVTPKNPFDMG

Download         Length: 888 bp

>T49664 NZ_CP009769:c4699530-4698643 [Pectobacterium brasiliense]
ATGCTGAAGCAACAAATTCGCCAAATCGTCCAGTCAAACCCTGACTATGCCGCAGTGACACCCGTCATAGAAAAAGAGAT
CTTGCATCATGACATTATAGATGTGCTGATCAAACAGGGTGTCATGCAACGGTTAACGTTTATTGGCGGCACCTCATTAC
GAATGTGTTACAACAGTAGCAGGCTATCAGAAGATCTTGATTTCAATGGTGGTCATGATTTCAAGCCCTCAGCATTTGAG
GGGCTGGAATCCGAGATCCAAACCTATATTCAGAACAAGTATGAAACCGAAGTTTGGGTAAACAAACCTTCTGGCGAGCG
GCAAGGGGATACCGTTTCTTGGAAAATTAGTATCGTAAAAGAAGCGAATCGTCCTGATTTGCCACGGCAAAAAATGCATA
TTGATGTCTGTGCTATTCCATCATTTGATATTGAAAAGCGCCCGCTAATCAATCATTACGACATTGTTGTACCGACTGAA
GGGATCTTGGTTCCGGTACAATCGTTACAAGAAACACTAGCCGATAAGCTGATCGCGTTAGCGTATCGGGCAAGACGTAT
AAAGCCTCGTGATATCTGGGATATTGTTTGGATTAAGCAGCGCGGCATTGATCTATCCAAAACACTGGTTGAAAAGAAAC
TCACCGCCAGACACAAGCAAACAGATGACTTTCGACAAGCGCTATCTATTCAGTTAGCTAAGTTAATGTTGCAAGATGAA
GTCCGTGACGACTTTAATATGGAAATGAGCCGCTTTATCCCTAAGCAAATTAAAGAGAGAACCCTCGATAATCCCGAATA
TTGGGATTATGTTCAGAGAGAGGTACATGCCATCACGTCTGAGTTATTGAATGACGTAACACCAAAAAATCCATTTGATA
TGGGTTAA

Antitoxin


Download         Length: 175 a.a.        Molecular weight: 19442.56 Da        Isoelectric Point: 9.0504

>AT49664 WP_075278489.1 NZ_CP009769:c4700081-4699557 [Pectobacterium brasiliense]
MTKSDELLNVFSKAVNAGGGIHSATELAFMQGVPCDPAFRKFLADCVKKGLLRRVVKGFYESVITPPEPETAIYKIIKKL
RSGVLNYISLESQLSHTGDISQVVMGRVTVVTKGRSGCFDTPYGVIEFTHTKKPVEQVAPNLYYDPDIKMYRAYKEQAIA
DLKHCQRNLHMLES

Download         Length: 525 bp

>AT49664 NZ_CP009769:c4700081-4699557 [Pectobacterium brasiliense]
ATGACTAAATCTGATGAGCTACTAAACGTATTTTCCAAAGCGGTGAACGCTGGCGGTGGCATTCACAGTGCAACAGAGCT
GGCTTTTATGCAGGGTGTGCCATGTGACCCAGCCTTTAGAAAGTTCCTAGCCGATTGCGTAAAGAAGGGATTGCTAAGAC
GAGTGGTGAAAGGCTTCTATGAAAGTGTTATTACACCACCTGAGCCTGAGACTGCCATTTATAAAATCATCAAAAAGTTG
CGCAGTGGCGTATTGAACTACATCAGTTTAGAAAGCCAGCTCAGTCATACCGGTGATATTTCACAAGTTGTGATGGGTAG
AGTCACGGTAGTGACTAAAGGTCGAAGTGGTTGTTTTGATACGCCTTATGGCGTGATCGAGTTTACCCATACTAAAAAGC
CAGTCGAGCAAGTTGCACCTAATTTGTACTATGACCCTGATATTAAAATGTATCGCGCATACAAGGAACAAGCGATTGCA
GATCTAAAGCACTGCCAGCGCAATCTACATATGTTGGAGAGCTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References