Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/Phd(antitoxin) |
| Location | 1852120..1852667 | Replicon | chromosome |
| Accession | NZ_CP009765 | ||
| Organism | Vibrio parahaemolyticus strain FORC_006 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | - |
| Locus tag | FORC6_RS08615 | Protein ID | WP_025613283.1 |
| Coordinates | 1852120..1852422 (-) | Length | 101 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | U3A269 |
| Locus tag | FORC6_RS08620 | Protein ID | WP_005448240.1 |
| Coordinates | 1852410..1852667 (-) | Length | 86 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FORC6_RS26375 | 1847213..1847380 | - | 168 | WP_001883086.1 | DUF3265 domain-containing protein | - |
| FORC6_RS08585 | 1847761..1848186 | - | 426 | WP_025613242.1 | N-acetyltransferase | - |
| FORC6_RS08590 | 1848341..1848763 | - | 423 | WP_025613243.1 | hypothetical protein | - |
| FORC6_RS08595 | 1848926..1849870 | - | 945 | WP_025613244.1 | D-2-hydroxyacid dehydrogenase family protein | - |
| FORC6_RS23965 | 1849897..1849989 | - | 93 | WP_079740743.1 | DUF3265 domain-containing protein | - |
| FORC6_RS08600 | 1850023..1850379 | - | 357 | WP_020198239.1 | hypothetical protein | - |
| FORC6_RS08605 | 1850532..1851008 | - | 477 | WP_180760184.1 | DUF4145 domain-containing protein | - |
| FORC6_RS08610 | 1851358..1851954 | - | 597 | WP_060657808.1 | methyltransferase domain-containing protein | - |
| FORC6_RS23970 | 1851992..1852084 | - | 93 | WP_079740744.1 | DUF3265 domain-containing protein | - |
| FORC6_RS08615 | 1852120..1852422 | - | 303 | WP_025613283.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
| FORC6_RS08620 | 1852410..1852667 | - | 258 | WP_005448240.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin |
| FORC6_RS08625 | 1852867..1853217 | - | 351 | WP_008077879.1 | hypothetical protein | - |
| FORC6_RS08630 | 1853363..1853824 | - | 462 | WP_140053015.1 | hypothetical protein | - |
| FORC6_RS23975 | 1853853..1853945 | - | 93 | WP_079740850.1 | DUF3265 domain-containing protein | - |
| FORC6_RS08635 | 1853968..1854435 | - | 468 | WP_060657810.1 | NUDIX domain-containing protein | - |
| FORC6_RS08640 | 1854557..1855078 | - | 522 | Protein_1624 | GNAT family N-acetyltransferase | - |
| FORC6_RS23980 | 1855109..1855186 | - | 78 | WP_079740851.1 | DUF3265 domain-containing protein | - |
| FORC6_RS08645 | 1855220..1855726 | - | 507 | Protein_1626 | GNAT family N-acetyltransferase | - |
| FORC6_RS08650 | 1855874..1856482 | - | 609 | WP_025613305.1 | pyridoxamine 5'-phosphate oxidase family protein | - |
| FORC6_RS23985 | 1856518..1856673 | - | 156 | WP_079740745.1 | DUF3265 domain-containing protein | - |
| FORC6_RS08655 | 1856663..1856968 | - | 306 | WP_025613306.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Genomic island | - | - | 1823640..2013809 | 190169 | |
| - | inside | Integron | - | - | 1824883..2012098 | 187215 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 101 a.a. Molecular weight: 11641.51 Da Isoelectric Point: 5.1765
>T49648 WP_025613283.1 NZ_CP009765:c1852422-1852120 [Vibrio parahaemolyticus]
MAEVIWTEPALSDLNDIAEYIALENVVAAKQLVQTIFSKVERLQTFPESGRIPPELEHLSYREVVVNPCRVFYKQDGDKV
FILFVMRAERDLRKFLLSKQ
MAEVIWTEPALSDLNDIAEYIALENVVAAKQLVQTIFSKVERLQTFPESGRIPPELEHLSYREVVVNPCRVFYKQDGDKV
FILFVMRAERDLRKFLLSKQ
Download Length: 303 bp
>T49648 NZ_CP009765:c1852422-1852120 [Vibrio parahaemolyticus]
ATGGCTGAAGTAATCTGGACTGAACCAGCGTTATCTGACCTCAATGATATCGCTGAATATATCGCACTTGAAAATGTCGT
AGCTGCAAAGCAGTTAGTACAAACGATCTTCTCCAAAGTCGAACGCCTACAAACTTTCCCGGAGTCAGGTCGCATTCCAC
CTGAACTAGAACATTTAAGTTATCGTGAAGTTGTCGTTAATCCATGTCGCGTTTTCTATAAACAAGACGGTGACAAAGTG
TTTATTCTGTTTGTTATGCGTGCAGAGAGAGATTTGCGTAAGTTCTTGTTGAGTAAGCAGTAA
ATGGCTGAAGTAATCTGGACTGAACCAGCGTTATCTGACCTCAATGATATCGCTGAATATATCGCACTTGAAAATGTCGT
AGCTGCAAAGCAGTTAGTACAAACGATCTTCTCCAAAGTCGAACGCCTACAAACTTTCCCGGAGTCAGGTCGCATTCCAC
CTGAACTAGAACATTTAAGTTATCGTGAAGTTGTCGTTAATCCATGTCGCGTTTTCTATAAACAAGACGGTGACAAAGTG
TTTATTCTGTTTGTTATGCGTGCAGAGAGAGATTTGCGTAAGTTCTTGTTGAGTAAGCAGTAA
Antitoxin
Download Length: 86 a.a. Molecular weight: 9606.10 Da Isoelectric Point: 6.7269
>AT49648 WP_005448240.1 NZ_CP009765:c1852667-1852410 [Vibrio parahaemolyticus]
MKVELVTSLKRQATKILADLHDTKEPVLITEHGKPSAYLVDVDDYEFMQNRLAILEGIARGERALADGKVVSHDEAKDKM
SKWLK
MKVELVTSLKRQATKILADLHDTKEPVLITEHGKPSAYLVDVDDYEFMQNRLAILEGIARGERALADGKVVSHDEAKDKM
SKWLK
Download Length: 258 bp
>AT49648 NZ_CP009765:c1852667-1852410 [Vibrio parahaemolyticus]
ATGAAAGTAGAACTAGTTACATCACTTAAACGTCAAGCAACTAAGATCCTCGCCGATCTCCATGACACTAAAGAACCCGT
GTTAATTACTGAACATGGTAAGCCATCTGCGTATCTCGTTGATGTTGATGACTATGAATTTATGCAAAATCGTTTAGCTA
TTCTTGAGGGTATTGCAAGAGGTGAGCGTGCGCTAGCTGACGGTAAAGTGGTAAGTCACGATGAAGCCAAGGACAAAATG
TCAAAATGGCTGAAGTAA
ATGAAAGTAGAACTAGTTACATCACTTAAACGTCAAGCAACTAAGATCCTCGCCGATCTCCATGACACTAAAGAACCCGT
GTTAATTACTGAACATGGTAAGCCATCTGCGTATCTCGTTGATGTTGATGACTATGAATTTATGCAAAATCGTTTAGCTA
TTCTTGAGGGTATTGCAAGAGGTGAGCGTGCGCTAGCTGACGGTAAAGTGGTAAGTCACGATGAAGCCAAGGACAAAATG
TCAAAATGGCTGAAGTAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|