Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2903271..2903422 | Replicon | chromosome |
| Accession | NZ_CP009756 | ||
| Organism | Enterobacter cloacae strain GGT036 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2903284..2903387 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2903271..2903422 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EC036_RS13670 | 2899547..2900989 | + | 1443 | WP_038419909.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| EC036_RS13675 | 2901095..2901334 | + | 240 | WP_013096113.1 | YebV family protein | - |
| EC036_RS13680 | 2901368..2902012 | - | 645 | WP_038419910.1 | protein-serine/threonine phosphatase | - |
| EC036_RS13685 | 2902179..2903120 | + | 942 | WP_038419912.1 | VirK/YbjX family protein | - |
| - | 2903271..2903422 | + | 152 | - | - | Antitoxin |
| - | 2903284..2903387 | - | 104 | - | - | Toxin |
| EC036_RS13690 | 2903527..2903865 | - | 339 | WP_038419913.1 | YebY family protein | - |
| EC036_RS13695 | 2903882..2904751 | - | 870 | WP_038419914.1 | copper homeostasis membrane protein CopD | - |
| EC036_RS13700 | 2904753..2905124 | - | 372 | WP_038419916.1 | CopC domain-containing protein YobA | - |
| EC036_RS13705 | 2905262..2905492 | + | 231 | WP_013096102.1 | DNA polymerase III subunit theta | - |
| EC036_RS13710 | 2905602..2906252 | + | 651 | WP_038419917.1 | carbon-nitrogen hydrolase family protein | - |
| EC036_RS13715 | 2906276..2906938 | + | 663 | WP_013096100.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T49602 NZ_CP009756:c2903387-2903284 [Enterobacter cloacae]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 152 bp
>AT49602 NZ_CP009756:2903271-2903422 [Enterobacter cloacae]
CTTTCAATCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
CTTTCAATCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
