Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 1905470..1905564 Replicon chromosome
Accession NZ_CP009723
Organism Yersinia pestis strain Shasta

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 1905471..1905564 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 1905470..1905564 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
BZ15_RS10020 1900663..1902741 - 2079 WP_002211100.1 flagellar biosynthesis protein FlhA -
BZ15_RS10025 1902741..1903901 - 1161 WP_002211099.1 flagellar type III secretion system protein FlhB -
BZ15_RS10030 1904433..1904891 + 459 WP_002211098.1 hypothetical protein -
BZ15_RS10035 1904885..1905211 + 327 WP_002211097.1 DUF1493 family protein -
- 1905470..1905564 + 95 - - Antitoxin
- 1905471..1905564 - 94 - - Toxin
BZ15_RS10045 1905734..1906075 - 342 WP_002211095.1 YebY family protein -
BZ15_RS10050 1906172..1907056 - 885 WP_002211094.1 copper homeostasis membrane protein CopD -
BZ15_RS10055 1907059..1907445 - 387 WP_002211093.1 CopC domain-containing protein YobA -
BZ15_RS10060 1907842..1908351 - 510 WP_002211092.1 non-heme ferritin -
BZ15_RS10065 1908752..1908982 + 231 WP_002211091.1 DNA polymerase III subunit theta -
BZ15_RS10070 1909042..1909992 - 951 WP_002211090.1 prolyl aminopeptidase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 94 bp

>T49536 NZ_CP009723:c1905564-1905471 [Yersinia pestis]
TAAGCCTACATTAATACCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATCAGGAATCGTA
TTCGGTCTTTTTTT

Antitoxin


Download         Length: 95 bp

>AT49536 NZ_CP009723:1905470-1905564 [Yersinia pestis]
TAAAAAAAGACCGAATACGATTCCTGATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGT
ATTAATGTAGGCTTA

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References