Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 2636143..2636237 Replicon chromosome
Accession NZ_CP009715
Organism Yersinia pestis Pestoides F

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 2636143..2636236 (+)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 2636143..2636237 (-)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
BZ18_RS13285 2631706..2632656 + 951 WP_002211090.1 prolyl aminopeptidase -
BZ18_RS13290 2632716..2632946 - 231 WP_002211091.1 DNA polymerase III subunit theta -
BZ18_RS13295 2633347..2633856 + 510 WP_002211092.1 non-heme ferritin -
BZ18_RS13300 2634262..2634648 + 387 WP_002211093.1 CopC domain-containing protein YobA -
BZ18_RS13305 2634651..2635535 + 885 WP_002211094.1 copper homeostasis membrane protein CopD -
BZ18_RS13310 2635632..2635973 + 342 WP_002211095.1 YebY family protein -
- 2636143..2636236 + 94 - - Toxin
- 2636143..2636237 - 95 - - Antitoxin
BZ18_RS13320 2636496..2636822 - 327 WP_002211097.1 DUF1493 family protein -
BZ18_RS13325 2636816..2637274 - 459 WP_002211098.1 hypothetical protein -
BZ18_RS13330 2637806..2638966 + 1161 WP_002211099.1 flagellar type III secretion system protein FlhB -
BZ18_RS13335 2638966..2641044 + 2079 WP_011906249.1 flagellar biosynthesis protein FlhA -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 94 bp

>T49520 NZ_CP009715:2636143-2636236 [Yersinia pestis Pestoides F]
TAAGCCTACATTAATACCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATCAGGAATCGTA
TTCGGTCTTTTTTT

Antitoxin


Download         Length: 95 bp

>AT49520 NZ_CP009715:c2636237-2636143 [Yersinia pestis Pestoides F]
TAAAAAAAGACCGAATACGATTCCTGATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGT
ATTAATGTAGGCTTA

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References