Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 942989..943083 Replicon chromosome
Accession NZ_CP009704
Organism Yersinia pestis strain Harbin35

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 942990..943083 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 942989..943083 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
CH55_RS05525 938182..940260 - 2079 WP_002211100.1 flagellar biosynthesis protein FlhA -
CH55_RS05530 940260..941420 - 1161 WP_002211099.1 flagellar type III secretion system protein FlhB -
CH55_RS05535 941952..942410 + 459 WP_002211098.1 hypothetical protein -
CH55_RS05540 942404..942730 + 327 WP_002211097.1 DUF1493 family protein -
- 942989..943083 + 95 - - Antitoxin
- 942990..943083 - 94 - - Toxin
CH55_RS05550 943253..943594 - 342 WP_002211095.1 YebY family protein -
CH55_RS05555 943691..944575 - 885 WP_002211094.1 copper homeostasis membrane protein CopD -
CH55_RS05560 944578..944964 - 387 WP_002211093.1 CopC domain-containing protein YobA -
CH55_RS05565 945361..945870 - 510 WP_002211092.1 non-heme ferritin -
CH55_RS05570 946271..946501 + 231 WP_002211091.1 DNA polymerase III subunit theta -
CH55_RS05575 946561..947512 - 952 Protein_866 prolyl aminopeptidase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 94 bp

>T49469 NZ_CP009704:c943083-942990 [Yersinia pestis]
TAAGCCTACATTAATACCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATCAGGAATCGTA
TTCGGTCTTTTTTT

Antitoxin


Download         Length: 95 bp

>AT49469 NZ_CP009704:942989-943083 [Yersinia pestis]
TAAAAAAAGACCGAATACGATTCCTGATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGT
ATTAATGTAGGCTTA

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References