Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) hicAB/HicB-HicA
Location 910416..911062 Replicon chromosome
Accession NZ_CP009704
Organism Yersinia pestis strain Harbin35

Toxin (Protein)


Gene name hicA Uniprot ID A0A3G5L3F2
Locus tag CH55_RS05390 Protein ID WP_002214976.1
Coordinates 910416..910598 (+) Length 61 a.a.

Antitoxin (Protein)


Gene name hicB Uniprot ID A0A0U1R391
Locus tag CH55_RS05395 Protein ID WP_002211129.1
Coordinates 910643..911062 (+) Length 140 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
CH55_RS05355 905802..906272 + 471 WP_002227961.1 flagellar basal body-associated protein FliL -
CH55_RS05360 906278..907279 + 1002 WP_002211135.1 flagellar motor switch protein FliM -
CH55_RS05365 907276..907692 + 417 WP_002211134.1 flagellar motor switch protein FliN -
CH55_RS05370 907692..908228 + 537 WP_002211133.1 flagellar biosynthetic protein FliO -
CH55_RS05375 908309..909049 + 741 WP_002220494.1 flagellar type III secretion system pore protein FliP -
CH55_RS05380 909155..909424 + 270 WP_002211131.1 flagellar biosynthesis protein FliQ -
CH55_RS05385 909427..910209 + 783 WP_002211130.1 flagellar type III secretion system protein FliR -
CH55_RS05390 910416..910598 + 183 WP_002214976.1 type II toxin-antitoxin system HicA family toxin Toxin
CH55_RS05395 910643..911062 + 420 WP_002211129.1 type II toxin-antitoxin system HicB family antitoxin Antitoxin
CH55_RS05400 911320..912279 - 960 WP_002223882.1 sugar kinase -
CH55_RS05405 912328..913349 - 1022 Protein_833 ABC transporter permease -
CH55_RS05410 913352..914929 - 1578 WP_002211126.1 sugar ABC transporter ATP-binding protein -
CH55_RS05415 914995..915990 - 996 WP_002211125.1 substrate-binding domain-containing protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

HicA mRNA interferase family

(4-59)

Antitoxin

HicB-like antitoxin of toxin-antitoxin system

(4-131)


Sequences

Toxin        


Download         Length: 61 a.a.        Molecular weight: 6783.99 Da        Isoelectric Point: 10.8877

>T49468 WP_002214976.1 NZ_CP009704:910416-910598 [Yersinia pestis]
VKSSELIKLLETNGWKLMRVKGSHHQFKHPDFAAVITVPHPKKDVKPGTLRQILKDANLS

Download         Length: 183 bp

>T49468 NZ_CP009704:910416-910598 [Yersinia pestis]
GTGAAAAGTTCGGAGCTGATAAAACTGCTCGAAACAAATGGTTGGAAGTTGATGAGAGTTAAAGGCAGTCATCATCAATT
CAAACATCCTGATTTCGCGGCAGTCATAACAGTACCGCATCCCAAAAAGGATGTTAAACCGGGAACCCTCCGGCAAATTC
TGAAAGATGCAAACCTTAGTTAA

Antitoxin


Download         Length: 140 a.a.        Molecular weight: 15549.42 Da        Isoelectric Point: 4.7731

>AT49468 WP_002211129.1 NZ_CP009704:910643-911062 [Yersinia pestis]
MAIYPAYVHVDNDGSASGYFPDVKGCIFAINAGEDLFAEASSALDAHFEALVSEGIEIPEAHDMPYHVYRNPCDYADGGQ
WYNVNIDMSKYDGKVERINVTLPHRLIHQIDTIVKVRPEYASRSNFLAEAARKELQKLA

Download         Length: 420 bp

>AT49468 NZ_CP009704:910643-911062 [Yersinia pestis]
ATGGCTATCTATCCCGCCTATGTTCACGTTGATAATGATGGCTCGGCAAGCGGTTATTTCCCCGATGTCAAAGGCTGTAT
TTTTGCCATCAATGCCGGGGAGGATTTATTTGCAGAAGCATCAAGCGCCCTGGATGCACACTTTGAAGCTTTGGTGTCTG
AAGGTATCGAAATTCCTGAAGCTCATGACATGCCTTACCACGTTTACCGTAACCCATGCGATTACGCTGATGGCGGACAG
TGGTATAACGTGAATATTGATATGTCGAAATATGATGGAAAAGTTGAACGAATTAACGTCACTCTTCCGCACCGGCTGAT
TCATCAAATCGATACTATTGTTAAAGTGCGTCCCGAGTATGCCAGCCGAAGCAATTTTCTAGCCGAAGCAGCACGTAAAG
AATTACAGAAATTGGCGTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A3G5L3F2

Antitoxin

Source ID Structure
AlphaFold DB A0A0U1R391

References