Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1771167..1771438 | Replicon | chromosome |
| Accession | NZ_CP009685 | ||
| Organism | Escherichia coli str. K-12 substr. MG1655 strain K-12 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1771297..1771400 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1771167..1771438 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EO53_RS08675 | 1767722..1768384 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| EO53_RS08680 | 1768408..1769064 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| EO53_RS08685 | 1769166..1769396 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| EO53_RS08690 | 1769535..1769909 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| EO53_RS08695 | 1769913..1770785 | + | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| EO53_RS08700 | 1770798..1771139 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 1771167..1771438 | - | 272 | - | - | Antitoxin |
| - | 1771297..1771400 | + | 104 | - | - | Toxin |
| EO53_RS08710 | 1771535..1772191 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| EO53_RS08715 | 1772192..1772383 | - | 192 | WP_000457842.1 | YebW family protein | - |
| EO53_RS08720 | 1772488..1772724 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| EO53_RS08725 | 1772842..1774281 | - | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T49436 NZ_CP009685:1771297-1771400 [Escherichia coli str. K-12 substr. MG1655]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT49436 NZ_CP009685:c1771438-1771167 [Escherichia coli str. K-12 substr. MG1655]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
