Detailed information of TA system TA049388

Bioinformatically predicted

Overview

TA module

• Type: IV
• Classification (family/domain): sdenTA/AbiEii(toxin)
• Location: 106959..108400
• Replicon: chromosome
• Accession: NZ_CP009678
• Organism: Pectobacterium odoriferum strain BC S7

Toxin (Protein)

• Gene name: sdenT
• Uniprot ID: -
• Locus tag: BCS7_RS00465
• Protein ID: WP_103165085.1
• Coordinates: 107513..108400 (+)
• Length: 296 a.a.

Antitoxin (Protein)

• Gene name: sdenA
• Uniprot ID: A0A7T5UAJ1
• Locus tag: BCS7_RS00460
• Protein ID: WP_039490190.1
• Coordinates: 106959..107483 (+)
• Length: 175 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
BCS7_RS00450	102273..104141	+	1869	WP_103165087.1	DUF3578 domain-containing protein	-
BCS7_RS00455	104160..106639	+	2480	Protein_90	DUF2357 domain-containing protein	-
BCS7_RS00460	106959..107483	+	525	WP_039490190.1	hypothetical protein	Antitoxin
BCS7_RS00465	107513..108400	+	888	WP_103165085.1	nucleotidyl transferase AbiEii/AbiGii toxin family protein	Toxin
BCS7_RS00470	108505..109368	-	864	WP_039296411.1	YicC family protein	-
BCS7_RS00475	109466..110374	-	909	WP_103160452.1	LysR family transcriptional regulator	-
BCS7_RS00480	110848..111795	-	948	WP_103165084.1	isoaspartyl peptidase/L-asparaginase	-
BCS7_RS00485	111854..112675	-	822	WP_103165083.1	M55 family metallopeptidase	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• Nucleotidyl transferase AbiEii toxin, Type IV TA system (39-265)

Antitoxin

No domain identified.

Sequences

Toxin

Protein

• Length: 296 a.a.
• Molecular weight: 33963.86 Da
• Isoelectric Point: 5.7046

>T49388 WP_103165085.1 NZ_CP009678:107513-108400 [Pectobacterium odoriferum]
MLKQQIRQIVQSNPDYAAVTPVIEKEILHHDIIDVLIKQGVMQRLTFIGGTSLRMCYNSSRLSEDLDFNGGHDFQPSAFE
GLESEIQTYIQNKYETEVWVNKPSGEQQGDTVSWKISIVKDANRPDLPRQKMHIDVCAIPSFDIEKRPLINHYDILVPTE
GILVPVQSLQETLADKLIALAYRARRIKPRDIWDIVWIKQRGIDLSKTLVEKKLTARQKQTADFRQALSIQLAKLMSEDE
VRDDFNMEMSRFIPKQIKERTLDNPEYWAYVQGEVHAIASELLNDGTPKNPFDMG

Nucleotide

• Length: 888 bp

>T49388 NZ_CP009678:107513-108400 [Pectobacterium odoriferum]
ATGCTGAAGCAACAAATTCGCCAAATCGTCCAGTCAAACCCTGACTATGCCGCAGTGACACCCGTCATAGAAAAAGAGAT
CTTGCATCATGACATTATCGATGTGCTGATCAAACAGGGCGTCATGCAGCGGTTAACGTTTATTGGCGGCACCTCATTAC
GAATGTGTTACAACAGCAGCAGGCTATCAGAAGATCTTGATTTCAATGGTGGTCATGATTTCCAGCCCTCAGCGTTTGAG
GGGCTGGAGTCCGAAATCCAAACCTATATTCAGAACAAGTATGAAACCGAAGTTTGGGTAAACAAACCTTCTGGCGAGCA
GCAAGGGGATACCGTTTCTTGGAAAATTAGTATCGTAAAAGACGCTAATCGTCCTGATTTGCCACGGCAAAAAATGCATA
TTGACGTCTGTGCTATTCCGTCATTTGATATTGAAAAGCGCCCGCTAATCAATCATTACGACATCCTTGTTCCGACTGAA
GGGATCTTGGTTCCGGTACAGTCGTTACAAGAAACATTGGCCGATAAGTTGATCGCGTTAGCGTATCGGGCAAGACGTAT
TAAACCTCGTGATATCTGGGATATTGTTTGGATTAAGCAGCGTGGTATTGATTTATCCAAAACACTGGTTGAAAAGAAAC
TCACTGCCAGACAGAAGCAAACAGCAGACTTTCGACAGGCGCTGTCTATTCAGTTAGCCAAGCTAATGTCGGAAGATGAA
GTCCGTGACGACTTCAATATGGAAATGAGCCGCTTTATTCCTAAGCAAATCAAAGAGAGAACCCTCGATAATCCTGAATA
TTGGGCTTATGTTCAAGGGGAGGTACATGCTATCGCGTCTGAGTTACTGAATGACGGAACACCAAAAAATCCATTTGATA
TGGGTTAG

Antitoxin

Protein

• Length: 175 a.a.
• Molecular weight: 19358.53 Da
• Isoelectric Point: 9.0504

>AT49388 WP_039490190.1 NZ_CP009678:106959-107483 [Pectobacterium odoriferum]
MAKSDELLNALAKSVNAGGGIHSVTELAFMQGVPCDPAFRKFLADCVKKGLLRRVVKGFYESVITPPEPETAIYKIIKKL
RSGVLNYISLESQLSHTGDISQVVMGRVTVVTKGRSGCFDTPYGVIELTHTKKPVEQIAPNLYYDPDIKMYRAYKEQAIA
DLKHCQRNLHMLES

Nucleotide

• Length: 525 bp

>AT49388 NZ_CP009678:106959-107483 [Pectobacterium odoriferum]
ATGGCTAAATCTGATGAGCTATTAAACGCGTTGGCTAAATCAGTGAACGCTGGCGGTGGCATTCACAGTGTAACAGAGCT
GGCTTTTATGCAGGGGGTGCCTTGTGACCCAGCCTTTAGAAAGTTCCTGGCAGATTGCGTAAAGAAGGGGTTGCTAAGAC
GAGTGGTGAAAGGCTTCTATGAAAGTGTTATTACACCACCTGAGCCTGAGACTGCCATTTATAAAATCATCAAAAAGTTG
CGCAGTGGCGTATTGAACTACATCAGTTTAGAAAGTCAGCTCAGTCATACCGGTGATATTTCACAAGTTGTGATGGGTAG
AGTCACGGTGGTGACTAAAGGTCGAAGCGGTTGTTTTGATACGCCTTATGGCGTGATCGAGCTTACCCATACTAAAAAGC
CAGTCGAGCAAATTGCACCTAATTTGTACTATGACCCTGACATCAAAATGTATCGCGCATACAAGGAACAAGCGATTGCA
GACCTAAAGCACTGCCAGCGCAATCTACATATGTTGGAGAGCTAA

Structures

Antitoxin

• AlphaFold DB: A0A7T5UAJ1