Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1904831..1905102 | Replicon | chromosome |
| Accession | NZ_CP009644 | ||
| Organism | Escherichia coli ER2796 strain K-12 ER2796 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1904869..1904972 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1904831..1905102 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ER2796_RS09515 | 1901988..1903427 | + | 1440 | Protein_1820 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| ER2796_RS09520 | 1903545..1903781 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| ER2796_RS09525 | 1903886..1904077 | + | 192 | WP_000457842.1 | YebW family protein | - |
| ER2796_RS09530 | 1904078..1904734 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 1904831..1905102 | + | 272 | - | - | Antitoxin |
| - | 1904869..1904972 | - | 104 | - | - | Toxin |
| ER2796_RS09540 | 1905130..1905471 | - | 342 | WP_000976476.1 | YebY family protein | - |
| ER2796_RS09545 | 1905484..1906356 | - | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| ER2796_RS09550 | 1906360..1906734 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| ER2796_RS09555 | 1906873..1907103 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| ER2796_RS09560 | 1907205..1907861 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| ER2796_RS09565 | 1907885..1908547 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T49365 NZ_CP009644:c1904972-1904869 [Escherichia coli ER2796]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT49365 NZ_CP009644:1904831-1905102 [Escherichia coli ER2796]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
