Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | slvAT/RES(toxin) |
| Location | 582658..583619 | Replicon | chromosome |
| Accession | NZ_CP009632 | ||
| Organism | Burkholderia vietnamiensis LMG 10929 | ||
Toxin (Protein)
| Gene name | slvT | Uniprot ID | A0A1B4LHJ3 |
| Locus tag | AK36_RS27620 | Protein ID | WP_011880200.1 |
| Coordinates | 583086..583619 (+) | Length | 178 a.a. |
Antitoxin (Protein)
| Gene name | slvA | Uniprot ID | A0A1B4LHE0 |
| Locus tag | AK36_RS27615 | Protein ID | WP_011880199.1 |
| Coordinates | 582658..583089 (+) | Length | 144 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AK36_RS27590 | 578314..578721 | - | 408 | WP_011880193.1 | DUF934 domain-containing protein | - |
| AK36_RS27595 | 578718..580508 | - | 1791 | WP_011880194.1 | nitrite/sulfite reductase | - |
| AK36_RS32125 | 580642..580788 | - | 147 | Protein_550 | transposase | - |
| AK36_RS27605 | 581585..581812 | + | 228 | WP_043292778.1 | hypothetical protein | - |
| AK36_RS27610 | 581809..582243 | + | 435 | WP_011880197.1 | PIN domain-containing protein | - |
| AK36_RS27615 | 582658..583089 | + | 432 | WP_011880199.1 | hypothetical protein | Antitoxin |
| AK36_RS27620 | 583086..583619 | + | 534 | WP_011880200.1 | RES family NAD+ phosphorylase | Toxin |
| AK36_RS27625 | 584020..585003 | + | 984 | WP_080938772.1 | tyrosine-type recombinase/integrase | - |
| AK36_RS33450 | 585000..585383 | + | 384 | WP_144410681.1 | hypothetical protein | - |
| AK36_RS32135 | 585416..586233 | + | 818 | WP_085954470.1 | IS5-like element IS402 family transposase | - |
| AK36_RS27635 | 586283..586870 | + | 588 | WP_080938773.1 | tyrosine-type recombinase/integrase | - |
| AK36_RS27640 | 586867..587865 | + | 999 | WP_045579687.1 | tyrosine-type recombinase/integrase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Genomic island | - | - | 578314..663132 | 84818 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 178 a.a. Molecular weight: 19147.77 Da Isoelectric Point: 5.1857
>T49349 WP_011880200.1 NZ_CP009632:583086-583619 [Burkholderia vietnamiensis LMG 10929]
MILKPLQDIIAYRMHQPKWAVAPTSGAGAAKAGGRANRVGTPALYLALEVATAVAEYQQLSPLLPPGTLVSYRVTAAPVV
DFTAGFRGDHWSPLWESFFCDWRRDWFNKRIEPPSWVLGDEVIAAGAKGILFSSTQAAGGTNLVLFVDQLDNTDRLEVID
PAGALPRDQASWGESPA
MILKPLQDIIAYRMHQPKWAVAPTSGAGAAKAGGRANRVGTPALYLALEVATAVAEYQQLSPLLPPGTLVSYRVTAAPVV
DFTAGFRGDHWSPLWESFFCDWRRDWFNKRIEPPSWVLGDEVIAAGAKGILFSSTQAAGGTNLVLFVDQLDNTDRLEVID
PAGALPRDQASWGESPA
Download Length: 534 bp
>T49349 NZ_CP009632:583086-583619 [Burkholderia vietnamiensis LMG 10929]
ATGATCCTCAAGCCACTGCAGGACATCATCGCGTACCGGATGCACCAGCCCAAATGGGCGGTCGCGCCCACCAGTGGCGC
CGGGGCAGCGAAGGCAGGCGGGCGGGCGAACCGGGTCGGCACGCCGGCTTTGTACCTAGCCCTCGAAGTGGCTACCGCGG
TGGCCGAGTATCAGCAGCTGTCGCCGCTGCTACCGCCTGGCACGCTCGTGAGCTATCGCGTGACGGCCGCGCCCGTCGTT
GATTTCACGGCGGGCTTTCGTGGTGACCACTGGTCGCCATTGTGGGAGTCGTTCTTCTGCGACTGGCGCCGTGACTGGTT
CAACAAGCGGATCGAGCCACCAAGCTGGGTGCTAGGCGATGAGGTGATTGCCGCCGGCGCCAAAGGCATCCTGTTTTCGT
CAACGCAGGCAGCCGGCGGCACGAACCTGGTGCTGTTCGTTGACCAACTGGACAACACCGATCGCCTGGAGGTCATCGAT
CCAGCGGGCGCCTTGCCGCGCGATCAGGCCTCGTGGGGCGAGTCTCCCGCTTGA
ATGATCCTCAAGCCACTGCAGGACATCATCGCGTACCGGATGCACCAGCCCAAATGGGCGGTCGCGCCCACCAGTGGCGC
CGGGGCAGCGAAGGCAGGCGGGCGGGCGAACCGGGTCGGCACGCCGGCTTTGTACCTAGCCCTCGAAGTGGCTACCGCGG
TGGCCGAGTATCAGCAGCTGTCGCCGCTGCTACCGCCTGGCACGCTCGTGAGCTATCGCGTGACGGCCGCGCCCGTCGTT
GATTTCACGGCGGGCTTTCGTGGTGACCACTGGTCGCCATTGTGGGAGTCGTTCTTCTGCGACTGGCGCCGTGACTGGTT
CAACAAGCGGATCGAGCCACCAAGCTGGGTGCTAGGCGATGAGGTGATTGCCGCCGGCGCCAAAGGCATCCTGTTTTCGT
CAACGCAGGCAGCCGGCGGCACGAACCTGGTGCTGTTCGTTGACCAACTGGACAACACCGATCGCCTGGAGGTCATCGAT
CCAGCGGGCGCCTTGCCGCGCGATCAGGCCTCGTGGGGCGAGTCTCCCGCTTGA
Antitoxin
Download Length: 144 a.a. Molecular weight: 15299.19 Da Isoelectric Point: 5.6277
>AT49349 WP_011880199.1 NZ_CP009632:582658-583089 [Burkholderia vietnamiensis LMG 10929]
MNTLATPSPAASAATPTGAAPVSFEAFLSSLREPDTAAPVLSARRYVAALNIDLQTLADQAHVHRNTVARAPESASVQHF
LREAIRVIRAATDLSGDVYRALFWYRNEPLAVFDYQTAETLVSAGRAEDVLRYIVSLEAGAAG
MNTLATPSPAASAATPTGAAPVSFEAFLSSLREPDTAAPVLSARRYVAALNIDLQTLADQAHVHRNTVARAPESASVQHF
LREAIRVIRAATDLSGDVYRALFWYRNEPLAVFDYQTAETLVSAGRAEDVLRYIVSLEAGAAG
Download Length: 432 bp
>AT49349 NZ_CP009632:582658-583089 [Burkholderia vietnamiensis LMG 10929]
ATGAACACCCTCGCGACCCCCAGCCCAGCGGCGTCTGCGGCGACGCCCACCGGTGCGGCACCCGTCAGCTTCGAGGCCTT
TCTCAGCTCGCTACGGGAACCCGACACGGCAGCCCCCGTGCTGTCGGCACGACGCTATGTGGCGGCCCTGAACATCGATC
TGCAGACGCTGGCCGACCAGGCGCATGTTCACCGAAACACCGTGGCGCGAGCCCCGGAGTCGGCATCGGTTCAGCACTTC
CTGCGCGAAGCGATCCGCGTGATTCGCGCCGCGACCGACCTGTCCGGTGACGTGTACCGCGCGTTGTTCTGGTACCGCAA
CGAGCCGCTGGCGGTGTTCGATTACCAGACAGCCGAAACGCTGGTTTCCGCCGGCCGGGCCGAGGACGTGCTGCGCTACA
TCGTGTCGCTGGAAGCGGGCGCGGCCGGATGA
ATGAACACCCTCGCGACCCCCAGCCCAGCGGCGTCTGCGGCGACGCCCACCGGTGCGGCACCCGTCAGCTTCGAGGCCTT
TCTCAGCTCGCTACGGGAACCCGACACGGCAGCCCCCGTGCTGTCGGCACGACGCTATGTGGCGGCCCTGAACATCGATC
TGCAGACGCTGGCCGACCAGGCGCATGTTCACCGAAACACCGTGGCGCGAGCCCCGGAGTCGGCATCGGTTCAGCACTTC
CTGCGCGAAGCGATCCGCGTGATTCGCGCCGCGACCGACCTGTCCGGTGACGTGTACCGCGCGTTGTTCTGGTACCGCAA
CGAGCCGCTGGCGGTGTTCGATTACCAGACAGCCGAAACGCTGGTTTCCGCCGGCCGGGCCGAGGACGTGCTGCGCTACA
TCGTGTCGCTGGAAGCGGGCGCGGCCGGATGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
Structures
Toxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A1B4LHJ3 |
Antitoxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A1B4LHE0 |