Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | chpSB/PRK09812-ChpS |
Location | 1435321..1435922 | Replicon | chromosome |
Accession | NZ_CP009539 | ||
Organism | Yersinia ruckeri strain YRB |
Toxin (Protein)
Gene name | chpB | Uniprot ID | - |
Locus tag | BD65_RS06525 | Protein ID | WP_042525901.1 |
Coordinates | 1435566..1435922 (+) | Length | 119 a.a. |
Antitoxin (Protein)
Gene name | chpS | Uniprot ID | - |
Locus tag | BD65_RS06520 | Protein ID | WP_042525899.1 |
Coordinates | 1435321..1435572 (+) | Length | 84 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
BD65_RS06490 | 1430846..1431172 | - | 327 | WP_038240973.1 | YggL family protein | - |
BD65_RS06495 | 1431172..1431891 | - | 720 | WP_038240971.1 | tRNA (guanosine(46)-N7)-methyltransferase TrmB | - |
BD65_RS06500 | 1432117..1433217 | + | 1101 | WP_042525898.1 | A/G-specific adenine glycosylase | - |
BD65_RS06505 | 1433214..1433486 | + | 273 | WP_038240969.1 | oxidative damage protection protein | - |
BD65_RS06510 | 1433544..1434620 | + | 1077 | WP_004719291.1 | membrane-bound lytic murein transglycosylase MltC | - |
BD65_RS16855 | 1435024..1435161 | + | 138 | Protein_1278 | transposase | - |
BD65_RS06520 | 1435321..1435572 | + | 252 | WP_042525899.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin |
BD65_RS06525 | 1435566..1435922 | + | 357 | WP_042525901.1 | type II toxin-antitoxin system ChpB family toxin | Toxin |
BD65_RS06530 | 1436483..1436800 | - | 318 | WP_173425062.1 | YmgD family protein | - |
BD65_RS06535 | 1436823..1437191 | - | 369 | WP_042525906.1 | hypothetical protein | - |
BD65_RS06540 | 1437438..1437793 | + | 356 | Protein_1283 | hypothetical protein | - |
BD65_RS06545 | 1437790..1438722 | - | 933 | WP_042525908.1 | 6-phosphofructokinase II | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 119 a.a. Molecular weight: 12896.99 Da Isoelectric Point: 8.0166
>T49239 WP_042525901.1 NZ_CP009539:1435566-1435922 [Yersinia ruckeri]
MVKRKQGWDRGDIVLVDFNPVMGSEQRDARPALVLTKKLFNNLGIALVAPITQSGNYARHAGFTVSLSGAGCTTQGVVLL
NQVRMLDLMARNARFVEPLDEIAVNDALLKFATLVEID
MVKRKQGWDRGDIVLVDFNPVMGSEQRDARPALVLTKKLFNNLGIALVAPITQSGNYARHAGFTVSLSGAGCTTQGVVLL
NQVRMLDLMARNARFVEPLDEIAVNDALLKFATLVEID
Download Length: 357 bp
>T49239 NZ_CP009539:1435566-1435922 [Yersinia ruckeri]
ATGGTGAAGCGTAAACAGGGATGGGATCGCGGCGATATCGTTTTAGTAGATTTTAACCCAGTAATGGGAAGTGAGCAGCG
AGATGCTCGTCCAGCGCTGGTATTGACAAAAAAACTGTTTAACAATCTCGGCATAGCCCTTGTTGCACCAATAACTCAGA
GCGGTAACTATGCACGCCATGCTGGTTTTACCGTGTCGCTGTCGGGTGCAGGATGTACAACGCAAGGTGTCGTTTTACTC
AATCAAGTCCGAATGCTCGATCTTATGGCACGAAATGCCCGCTTTGTGGAGCCGCTTGATGAAATCGCCGTAAATGACGC
TCTGCTGAAATTTGCGACTCTAGTCGAAATTGACTAG
ATGGTGAAGCGTAAACAGGGATGGGATCGCGGCGATATCGTTTTAGTAGATTTTAACCCAGTAATGGGAAGTGAGCAGCG
AGATGCTCGTCCAGCGCTGGTATTGACAAAAAAACTGTTTAACAATCTCGGCATAGCCCTTGTTGCACCAATAACTCAGA
GCGGTAACTATGCACGCCATGCTGGTTTTACCGTGTCGCTGTCGGGTGCAGGATGTACAACGCAAGGTGTCGTTTTACTC
AATCAAGTCCGAATGCTCGATCTTATGGCACGAAATGCCCGCTTTGTGGAGCCGCTTGATGAAATCGCCGTAAATGACGC
TCTGCTGAAATTTGCGACTCTAGTCGAAATTGACTAG
Antitoxin
Download Length: 84 a.a. Molecular weight: 9130.48 Da Isoelectric Point: 5.6317
>AT49239 WP_042525899.1 NZ_CP009539:1435321-1435572 [Yersinia ruckeri]
MTIAIKKWGNSSGVVLPSLLLKKLGVTNGHHLDAEIKNGSLILTPTQRRYTLEELVAQCDKNAPMMAEEDVWGNDAPTGN
EIW
MTIAIKKWGNSSGVVLPSLLLKKLGVTNGHHLDAEIKNGSLILTPTQRRYTLEELVAQCDKNAPMMAEEDVWGNDAPTGN
EIW
Download Length: 252 bp
>AT49239 NZ_CP009539:1435321-1435572 [Yersinia ruckeri]
ATGACTATAGCAATCAAAAAGTGGGGCAACAGTAGTGGCGTTGTCTTACCCTCATTATTGTTGAAAAAACTAGGTGTTAC
CAACGGGCATCATCTTGATGCAGAAATCAAAAATGGCTCATTAATTCTTACTCCAACACAACGCCGCTATACGCTTGAAG
AGTTAGTCGCACAATGTGATAAAAATGCGCCAATGATGGCAGAAGAGGATGTTTGGGGTAACGACGCACCGACAGGGAAT
GAAATATGGTGA
ATGACTATAGCAATCAAAAAGTGGGGCAACAGTAGTGGCGTTGTCTTACCCTCATTATTGTTGAAAAAACTAGGTGTTAC
CAACGGGCATCATCTTGATGCAGAAATCAAAAATGGCTCATTAATTCTTACTCCAACACAACGCCGCTATACGCTTGAAG
AGTTAGTCGCACAATGTGATAAAAATGCGCCAATGATGGCAGAAGAGGATGTTTGGGGTAACGACGCACCGACAGGGAAT
GAAATATGGTGA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Structures
Toxin
Source | ID | Structure |
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Antitoxin
Source | ID | Structure |
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