Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 588504..588651 | Replicon | chromosome |
| Accession | NZ_CP009539 | ||
| Organism | Yersinia ruckeri strain YRB | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 588509..588602 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 588504..588651 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BD65_RS02620 | 583711..584340 | + | 630 | WP_004721714.1 | hypothetical protein | - |
| BD65_RS02625 | 584472..585233 | + | 762 | WP_144402960.1 | hypothetical protein | - |
| BD65_RS02630 | 585668..585904 | + | 237 | WP_042528219.1 | hypothetical protein | - |
| BD65_RS02635 | 585873..586202 | + | 330 | WP_042525088.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| BD65_RS02640 | 586582..587727 | + | 1146 | WP_042525089.1 | YRC family class C beta-lactamase | - |
| BD65_RS02645 | 587824..588432 | + | 609 | Protein_526 | tyrosine-type recombinase/integrase | - |
| - | 588504..588651 | + | 148 | - | - | Antitoxin |
| - | 588509..588602 | - | 94 | - | - | Toxin |
| BD65_RS02650 | 588761..589102 | - | 342 | WP_004721721.1 | YebY family protein | - |
| BD65_RS02655 | 589197..590081 | - | 885 | WP_042525090.1 | copper homeostasis membrane protein CopD | - |
| BD65_RS02660 | 590083..590469 | - | 387 | WP_042525091.1 | CopC domain-containing protein YobA | - |
| BD65_RS02665 | 590958..591473 | - | 516 | WP_004721727.1 | non-heme ferritin | - |
| BD65_RS02670 | 591876..592106 | + | 231 | WP_042525092.1 | DNA polymerase III subunit theta | - |
| BD65_RS02675 | 592228..593178 | - | 951 | WP_042525093.1 | prolyl aminopeptidase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 94 bp
>T49230 NZ_CP009539:c588602-588509 [Yersinia ruckeri]
TAAGCCTGCATGAAATGCCAACTTTTAGCGCACGGCTCTATCCCAAGAGCCATTTCCCTGGACCGAATATAGGAATCGTA
TTCGGTCTCTTTTT
TAAGCCTGCATGAAATGCCAACTTTTAGCGCACGGCTCTATCCCAAGAGCCATTTCCCTGGACCGAATATAGGAATCGTA
TTCGGTCTCTTTTT
Antitoxin
Download Length: 148 bp
>AT49230 NZ_CP009539:588504-588651 [Yersinia ruckeri]
CAGATAAAAAGAGACCGAATACGATTCCTATATTCGGTCCAGGGAAATGGCTCTTGGGATAGAGCCGTGCGCTAAAAGTT
GGCATTTCATGCAGGCTTATTAAGCCGTACCACTTAAGCGTAGTAGACGACCCACATTTTACCAATTT
CAGATAAAAAGAGACCGAATACGATTCCTATATTCGGTCCAGGGAAATGGCTCTTGGGATAGAGCCGTGCGCTAAAAGTT
GGCATTTCATGCAGGCTTATTAAGCCGTACCACTTAAGCGTAGTAGACGACCCACATTTTACCAATTT
