Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3739167..3739261 | Replicon | chromosome |
| Accession | NZ_CP009492 | ||
| Organism | Yersinia pestis strain PBM19 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3739168..3739261 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3739167..3739261 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CH59_RS18335 | 3734479..3735639 | - | 1161 | WP_002211099.1 | flagellar type III secretion system protein FlhB | - |
| CH59_RS18340 | 3736047..3737069 | + | 1023 | WP_000255944.1 | IS21-like element IS100 family transposase | - |
| CH59_RS18345 | 3737069..3737848 | + | 780 | WP_001297096.1 | IS21-like element IS100kyp family helper ATPase IstB | - |
| CH59_RS18350 | 3738130..3738588 | + | 459 | WP_002211098.1 | hypothetical protein | - |
| CH59_RS18355 | 3738582..3738908 | + | 327 | WP_002211097.1 | DUF1493 family protein | - |
| - | 3739167..3739261 | + | 95 | - | - | Antitoxin |
| - | 3739168..3739261 | - | 94 | - | - | Toxin |
| CH59_RS18365 | 3739431..3739772 | - | 342 | WP_002211095.1 | YebY family protein | - |
| CH59_RS18370 | 3739869..3740753 | - | 885 | WP_002211094.1 | copper homeostasis membrane protein CopD | - |
| CH59_RS18375 | 3740756..3741142 | - | 387 | WP_002211093.1 | CopC domain-containing protein YobA | - |
| CH59_RS18380 | 3741539..3742048 | - | 510 | WP_002211092.1 | non-heme ferritin | - |
| CH59_RS18385 | 3742449..3742679 | + | 231 | WP_002211091.1 | DNA polymerase III subunit theta | - |
| CH59_RS18390 | 3742739..3743689 | - | 951 | WP_002211090.1 | prolyl aminopeptidase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 94 bp
>T49168 NZ_CP009492:c3739261-3739168 [Yersinia pestis]
TAAGCCTACATTAATACCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATCAGGAATCGTA
TTCGGTCTTTTTTT
TAAGCCTACATTAATACCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATCAGGAATCGTA
TTCGGTCTTTTTTT
Antitoxin
Download Length: 95 bp
>AT49168 NZ_CP009492:3739167-3739261 [Yersinia pestis]
TAAAAAAAGACCGAATACGATTCCTGATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGT
ATTAATGTAGGCTTA
TAAAAAAAGACCGAATACGATTCCTGATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGT
ATTAATGTAGGCTTA
