Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | parDE/ParE-YefM |
| Location | 2315921..2316470 | Replicon | chromosome |
| Accession | NZ_CP009467 | ||
| Organism | Vibrio harveyi strain ATCC 33843 (392 [MAV]) | ||
Toxin (Protein)
| Gene name | parE | Uniprot ID | A0A2K7SRW8 |
| Locus tag | LA59_RS10515 | Protein ID | WP_015296889.1 |
| Coordinates | 2316171..2316470 (+) | Length | 100 a.a. |
Antitoxin (Protein)
| Gene name | parD | Uniprot ID | A0A347UQT2 |
| Locus tag | LA59_RS10510 | Protein ID | WP_005442033.1 |
| Coordinates | 2315921..2316163 (+) | Length | 81 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LA59_RS28320 | 2311361..2311516 | - | 156 | WP_158515397.1 | hypothetical protein | - |
| LA59_RS10470 | 2311735..2311992 | - | 258 | Protein_1999 | BrnT family toxin | - |
| LA59_RS10480 | 2312601..2312795 | - | 195 | WP_069687250.1 | hypothetical protein | - |
| LA59_RS26870 | 2312834..2312926 | - | 93 | WP_201258221.1 | DUF3265 domain-containing protein | - |
| LA59_RS10485 | 2313251..2313673 | - | 423 | WP_069687251.1 | hypothetical protein | - |
| LA59_RS26875 | 2314037..2314128 | - | 92 | Protein_2003 | DUF3265 domain-containing protein | - |
| LA59_RS10495 | 2314163..2314471 | - | 309 | WP_069687253.1 | hypothetical protein | - |
| LA59_RS26880 | 2314500..2314622 | - | 123 | WP_081334108.1 | DUF3265 domain-containing protein | - |
| LA59_RS10500 | 2314607..2315083 | - | 477 | WP_005500215.1 | GNAT family N-acetyltransferase | - |
| LA59_RS26885 | 2315098..2315205 | - | 108 | WP_081334155.1 | DUF3265 domain-containing protein | - |
| LA59_RS10505 | 2315223..2315672 | - | 450 | WP_005448614.1 | hypothetical protein | - |
| LA59_RS26890 | 2315718..2315846 | - | 129 | WP_081334156.1 | DUF3265 domain-containing protein | - |
| LA59_RS10510 | 2315921..2316163 | + | 243 | WP_005442033.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin |
| LA59_RS10515 | 2316171..2316470 | + | 300 | WP_015296889.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
| LA59_RS28420 | 2316534..2316626 | - | 93 | WP_078555087.1 | DUF3265 domain-containing protein | - |
| LA59_RS10520 | 2316652..2317239 | - | 588 | WP_069687254.1 | hypothetical protein | - |
| LA59_RS10525 | 2317383..2317841 | - | 459 | WP_145924684.1 | hypothetical protein | - |
| LA59_RS26900 | 2317916..2318038 | - | 123 | WP_081334110.1 | DUF3265 domain-containing protein | - |
| LA59_RS10530 | 2318035..2318334 | - | 300 | WP_069687256.1 | hypothetical protein | - |
| LA59_RS26905 | 2318364..2318489 | - | 126 | WP_081334157.1 | DUF3265 domain-containing protein | - |
| LA59_RS10535 | 2318938..2319564 | - | 627 | WP_069687257.1 | hypothetical protein | - |
| LA59_RS26910 | 2319593..2319703 | - | 111 | WP_081334158.1 | DUF3265 domain-containing protein | - |
| LA59_RS10540 | 2319700..2320230 | - | 531 | WP_069687258.1 | hypothetical protein | - |
| LA59_RS26915 | 2320259..2320351 | - | 93 | WP_131170466.1 | DUF3265 domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Genomic island | - | - | 2303852..2400792 | 96940 | |
| - | inside | Integron | - | - | 2307992..2400792 | 92800 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 100 a.a. Molecular weight: 11502.11 Da Isoelectric Point: 9.3224
>T49134 WP_015296889.1 NZ_CP009467:2316171-2316470 [Vibrio harveyi]
MQKNKYKLSNLAQSHLRKVKNYTVENFSELQWRNYKDTLLSGFQMLADNPGLGRSCDEIYPNGFYFPIGKHTAYFTKEDD
FILVVAVLGQSQLPQNHLK
MQKNKYKLSNLAQSHLRKVKNYTVENFSELQWRNYKDTLLSGFQMLADNPGLGRSCDEIYPNGFYFPIGKHTAYFTKEDD
FILVVAVLGQSQLPQNHLK
Download Length: 300 bp
>T49134 NZ_CP009467:2316171-2316470 [Vibrio harveyi]
ATGCAAAAGAACAAATACAAGCTAAGTAACTTAGCACAATCTCACTTGCGCAAGGTCAAAAACTACACTGTTGAAAACTT
TTCTGAATTACAGTGGCGCAACTATAAAGACACTTTGCTATCGGGGTTTCAGATGCTAGCTGATAATCCAGGTTTAGGAA
GAAGTTGTGACGAGATATACCCAAATGGCTTTTATTTTCCGATTGGAAAACACACAGCTTATTTCACCAAAGAAGATGAC
TTTATCTTAGTCGTTGCTGTTTTAGGTCAATCACAACTACCCCAGAATCACCTGAAATAA
ATGCAAAAGAACAAATACAAGCTAAGTAACTTAGCACAATCTCACTTGCGCAAGGTCAAAAACTACACTGTTGAAAACTT
TTCTGAATTACAGTGGCGCAACTATAAAGACACTTTGCTATCGGGGTTTCAGATGCTAGCTGATAATCCAGGTTTAGGAA
GAAGTTGTGACGAGATATACCCAAATGGCTTTTATTTTCCGATTGGAAAACACACAGCTTATTTCACCAAAGAAGATGAC
TTTATCTTAGTCGTTGCTGTTTTAGGTCAATCACAACTACCCCAGAATCACCTGAAATAA
Antitoxin
Download Length: 81 a.a. Molecular weight: 9047.26 Da Isoelectric Point: 5.6926
>AT49134 WP_005442033.1 NZ_CP009467:2315921-2316163 [Vibrio harveyi]
MHTLTANDAKRNFGELLLSAQREPVKISKNSKDTVVVMSIRDFEELEAMKVEYLKHCFKSAKEDLNNGNTVDGESFLNSL
MHTLTANDAKRNFGELLLSAQREPVKISKNSKDTVVVMSIRDFEELEAMKVEYLKHCFKSAKEDLNNGNTVDGESFLNSL
Download Length: 243 bp
>AT49134 NZ_CP009467:2315921-2316163 [Vibrio harveyi]
ATGCATACATTAACAGCCAATGATGCCAAACGAAATTTCGGCGAACTACTTCTAAGCGCACAACGCGAACCAGTAAAAAT
CAGCAAAAACAGTAAAGATACTGTCGTTGTCATGTCCATTCGTGACTTTGAAGAGCTAGAAGCTATGAAAGTTGAGTACC
TCAAACACTGCTTTAAATCAGCCAAAGAAGACTTGAACAATGGGAACACTGTTGATGGCGAAAGCTTTCTAAATTCGCTG
TAA
ATGCATACATTAACAGCCAATGATGCCAAACGAAATTTCGGCGAACTACTTCTAAGCGCACAACGCGAACCAGTAAAAAT
CAGCAAAAACAGTAAAGATACTGTCGTTGTCATGTCCATTCGTGACTTTGAAGAGCTAGAAGCTATGAAAGTTGAGTACC
TCAAACACTGCTTTAAATCAGCCAAAGAAGACTTGAACAATGGGAACACTGTTGATGGCGAAAGCTTTCTAAATTCGCTG
TAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
Structures
Toxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A2K7SRW8 |
Antitoxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A347UQT2 |