Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1610375..1610520 | Replicon | chromosome |
| Accession | NZ_CP009461 | ||
| Organism | Klebsiella pneumoniae strain XH209 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1610411..1610513 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1610375..1610520 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LQ47_RS07885 | 1605505..1607565 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| LQ47_RS07890 | 1607569..1608228 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| LQ47_RS07895 | 1608307..1608537 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| LQ47_RS07900 | 1608650..1609024 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| LQ47_RS07905 | 1609028..1609897 | + | 870 | WP_004175431.1 | copper homeostasis membrane protein CopD | - |
| LQ47_RS07910 | 1609914..1610252 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1610375..1610520 | - | 146 | - | - | Antitoxin |
| - | 1610411..1610513 | + | 103 | - | - | Toxin |
| LQ47_RS26865 | 1610888..1611031 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| LQ47_RS07920 | 1611136..1612104 | - | 969 | WP_074439531.1 | DUF535 family protein | - |
| LQ47_RS07925 | 1612261..1612914 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| LQ47_RS07930 | 1612911..1613102 | - | 192 | WP_002911395.1 | YebW family protein | - |
| LQ47_RS07935 | 1613200..1613439 | - | 240 | WP_002911393.1 | YebV family protein | - |
| LQ47_RS07940 | 1613555..1614988 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T49116 NZ_CP009461:1610411-1610513 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT49116 NZ_CP009461:c1610520-1610375 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
