Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 462180..462262 Replicon chromosome
Accession NZ_CP009460
Organism Dickeya fangzhongdai strain ND14b

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 462180..462260 (+)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 462180..462262 (-)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
LH89_RS01945 458264..460006 + 1743 WP_038658929.1 ABC transporter permease subunit -
LH89_RS01950 460121..460369 - 249 WP_038658932.1 GlsB/YeaQ/YmgE family stress response membrane protein -
LH89_RS01955 460714..461157 - 444 WP_049869915.1 hypothetical protein -
LH89_RS01960 461672..462010 + 339 WP_038658935.1 YebY family protein -
- 462180..462260 + 81 - - Toxin
- 462180..462262 - 83 - - Antitoxin
LH89_RS01965 462928..463662 + 735 WP_038658938.1 hypothetical protein -
LH89_RS01970 464401..465795 + 1395 WP_081943060.1 pectate lyase -
LH89_RS01975 466056..467180 + 1125 WP_038658942.1 FIST C-terminal domain-containing protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 81 bp

>T49098 NZ_CP009460:462180-462260 [Dickeya fangzhongdai]
AATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGGGCACAGGAATCGTGTTCGGTCTTTTTT
T

Antitoxin


Download         Length: 83 bp

>AT49098 NZ_CP009460:c462262-462180 [Dickeya fangzhongdai]
ATAAAAAAAGACCGAACACGATTCCTGTGCCCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATT

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References