Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3793681..3793848 | Replicon | chromosome |
| Accession | NZ_CP009459 | ||
| Organism | Cedecea neteri strain ND14a | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3793681..3793784 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3793681..3793848 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LH86_RS17665 | 3789547..3789819 | + | 273 | WP_039304071.1 | hypothetical protein | - |
| LH86_RS17670 | 3789961..3790353 | - | 393 | WP_081943029.1 | GNAT family N-acetyltransferase | - |
| LH86_RS17675 | 3790393..3791640 | - | 1248 | WP_039304074.1 | MFS transporter | - |
| LH86_RS17680 | 3791896..3793392 | - | 1497 | WP_039304078.1 | SulP family inorganic anion transporter | - |
| - | 3793681..3793784 | - | 104 | - | - | Toxin |
| - | 3793681..3793848 | + | 168 | - | - | Antitoxin |
| LH86_RS17685 | 3793932..3794276 | - | 345 | WP_039304081.1 | YebY family protein | - |
| LH86_RS17690 | 3794305..3795180 | - | 876 | WP_039304084.1 | copper homeostasis membrane protein CopD | - |
| LH86_RS17695 | 3795186..3795560 | - | 375 | WP_039304087.1 | CopC domain-containing protein YobA | - |
| LH86_RS17700 | 3795702..3795932 | + | 231 | WP_008453979.1 | DNA polymerase III subunit theta | - |
| LH86_RS17705 | 3796062..3796790 | + | 729 | WP_039304090.1 | carbon-nitrogen hydrolase family protein | - |
| LH86_RS17710 | 3796820..3797491 | + | 672 | WP_039304092.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T49087 NZ_CP009459:c3793784-3793681 [Cedecea neteri]
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTTTTTTT
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTTTTTTT
Antitoxin
Download Length: 168 bp
>AT49087 NZ_CP009459:3793681-3793848 [Cedecea neteri]
AAAAAAAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TAATGCAGGCTAAATCGCCTTGCCCCTTAAGAATAGATTACCGGCGCAGGTTTTCCAGTCCGCAACAAAAGTGGTCAGAA
AAAAAGCG
AAAAAAAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TAATGCAGGCTAAATCGCCTTGCCCCTTAAGAATAGATTACCGGCGCAGGTTTTCCAGTCCGCAACAAAAGTGGTCAGAA
AAAAAGCG
