Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4065844..4066008 | Replicon | chromosome |
| Accession | NZ_CP009458 | ||
| Organism | Cedecea neteri strain M006 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4065844..4065947 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4065844..4066008 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LH23_RS18855 | 4061461..4061700 | + | 240 | WP_008453991.1 | YebV family protein | - |
| LH23_RS18860 | 4061797..4061988 | + | 192 | WP_039294507.1 | YebW family protein | - |
| LH23_RS18865 | 4062005..4062538 | - | 534 | WP_197062496.1 | GNAT family N-acetyltransferase | - |
| LH23_RS18870 | 4062553..4063800 | - | 1248 | WP_039294514.1 | MFS transporter | - |
| LH23_RS18875 | 4064057..4065553 | - | 1497 | WP_039294517.1 | SulP family inorganic anion transporter | - |
| - | 4065844..4065947 | - | 104 | - | - | Toxin |
| - | 4065844..4066008 | + | 165 | - | - | Antitoxin |
| LH23_RS18880 | 4066096..4066440 | - | 345 | WP_039294520.1 | YebY family protein | - |
| LH23_RS18885 | 4066469..4067344 | - | 876 | WP_039294522.1 | copper homeostasis membrane protein CopD | - |
| LH23_RS18890 | 4067350..4067724 | - | 375 | WP_039294526.1 | CopC domain-containing protein YobA | - |
| LH23_RS18895 | 4067866..4068096 | + | 231 | WP_008453979.1 | DNA polymerase III subunit theta | - |
| LH23_RS18900 | 4068226..4068954 | + | 729 | WP_039294529.1 | carbon-nitrogen hydrolase family protein | - |
| LH23_RS18905 | 4068984..4069655 | + | 672 | WP_039294532.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T49070 NZ_CP009458:c4065947-4065844 [Cedecea neteri]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTTTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTTTTTTT
Antitoxin
Download Length: 165 bp
>AT49070 NZ_CP009458:4065844-4066008 [Cedecea neteri]
AAAAAAAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TAATGCAGGCTAAGTCGCCTTGCCTCTTAAGAATAGATTACCGGCGCAGGTTTTCCAGTCCGCAGCAAAAGTGGTCAGAA
AAAAG
AAAAAAAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TAATGCAGGCTAAGTCGCCTTGCCTCTTAAGAATAGATTACCGGCGCAGGTTTTCCAGTCCGCAGCAAAAGTGGTCAGAA
AAAAG
