Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4597822..4597989 | Replicon | chromosome |
| Accession | NZ_CP009451 | ||
| Organism | Cedecea neteri strain SSMD04 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4597884..4597987 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4597822..4597989 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JT31_RS21265 | 4592866..4594923 | + | 2058 | WP_038483433.1 | oligopeptidase B | - |
| JT31_RS21270 | 4594920..4595591 | - | 672 | WP_038481862.1 | exodeoxyribonuclease X | - |
| JT31_RS21275 | 4595735..4595965 | - | 231 | WP_167549833.1 | DNA polymerase III subunit theta | - |
| JT31_RS21280 | 4596107..4596481 | + | 375 | WP_038481868.1 | CopC domain-containing protein YobA | - |
| JT31_RS21285 | 4596487..4597362 | + | 876 | WP_038481871.1 | copper homeostasis membrane protein CopD | - |
| JT31_RS21290 | 4597391..4597735 | + | 345 | WP_038481874.1 | YebY family protein | - |
| - | 4597822..4597989 | - | 168 | - | - | Antitoxin |
| - | 4597884..4597987 | + | 104 | - | - | Toxin |
| JT31_RS21295 | 4598121..4599194 | - | 1074 | WP_038481877.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| JT31_RS21300 | 4599169..4599459 | - | 291 | WP_052049036.1 | excisionase | - |
| JT31_RS21305 | 4599521..4599724 | - | 204 | WP_038481880.1 | DUF1187 family protein | - |
| JT31_RS21310 | 4599712..4600056 | - | 345 | WP_052049037.1 | Rrf2 family transcriptional regulator | - |
| JT31_RS22810 | 4600060..4602246 | - | 2187 | WP_052049038.1 | hypothetical protein | - |
| JT31_RS21325 | 4602452..4602760 | - | 309 | WP_038481886.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 4592854..4636470 | 43616 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T49031 NZ_CP009451:4597884-4597987 [Cedecea neteri]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 168 bp
>AT49031 NZ_CP009451:c4597989-4597822 [Cedecea neteri]
ATAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAGTCGCCTTGCCTCTTAAGAATAGATTACCGACGCAGGTTTTCCAGTCCGCAACAAAAGTGGTCAG
AAAAAAGC
ATAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAGTCGCCTTGCCTCTTAAGAATAGATTACCGACGCAGGTTTTCCAGTCCGCAACAAAAGTGGTCAG
AAAAAAGC
