Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3088126..3088266 | Replicon | chromosome |
| Accession | NZ_CP009450 | ||
| Organism | Pluralibacter gergoviae strain FB2 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3088161..3088264 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3088126..3088266 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LG71_RS14280 | 3084573..3085232 | - | 660 | WP_043083362.1 | exodeoxyribonuclease X | - |
| LG71_RS14285 | 3085260..3085949 | - | 690 | WP_043083363.1 | hypothetical protein | - |
| LG71_RS14290 | 3086034..3086264 | - | 231 | WP_043083364.1 | DNA polymerase III subunit theta | - |
| LG71_RS14295 | 3086403..3086777 | + | 375 | WP_043083365.1 | CopC domain-containing protein YobA | - |
| LG71_RS14300 | 3086781..3087650 | + | 870 | WP_043083366.1 | copper homeostasis membrane protein CopD | - |
| LG71_RS14305 | 3087666..3088004 | + | 339 | WP_043083367.1 | YebY family protein | - |
| - | 3088126..3088266 | - | 141 | - | - | Antitoxin |
| - | 3088161..3088264 | + | 104 | - | - | Toxin |
| LG71_RS27280 | 3088420..3088563 | - | 144 | WP_144244730.1 | Ecr family regulatory small membrane protein | - |
| LG71_RS14310 | 3088649..3088840 | - | 192 | WP_043083370.1 | YebW family protein | - |
| LG71_RS14315 | 3088933..3089172 | - | 240 | WP_043083371.1 | YebV family protein | - |
| LG71_RS14320 | 3089284..3090675 | - | 1392 | WP_052097994.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T49009 NZ_CP009450:3088161-3088264 [Pluralibacter gergoviae]
GGCAAGGCGATTGAGCCTTCATCAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGACTCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTTCATCAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGACTCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 141 bp
>AT49009 NZ_CP009450:c3088266-3088126 [Pluralibacter gergoviae]
ATAAAAAGAGACCGAATACGAGTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTGATGAAGGCTCAATCGCCTTGCCTTATAAGAATAGATGACCGTGGCAGGTTTTCCAGT
ATAAAAAGAGACCGAATACGAGTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTGATGAAGGCTCAATCGCCTTGCCTTATAAGAATAGATGACCGTGGCAGGTTTTCCAGT
