Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type II Classification (family/domain) mazEF/MazF(toxin)
Location 3119993..3120563 Replicon chromosome
Accession NZ_CP009427
Organism Mycobacterium tuberculosis strain 96121

Toxin (Protein)


Gene name mazF Uniprot ID P71650
Locus tag HR37_RS14890 Protein ID WP_003414166.1
Coordinates 3119993..3120349 (-) Length 119 a.a.

Antitoxin (Protein)


Gene name mazE Uniprot ID P0CL61
Locus tag HR37_RS14895 Protein ID WP_003901465.1
Coordinates 3120333..3120563 (-) Length 77 a.a.

Genomic Context


Locus tag Coordinates Strand Size (bp) Protein ID Product Description
HR37_RS14870 3115445..3117133 - 1689 WP_003414155.1 alpha/beta hydrolase family protein -
HR37_RS14875 3117137..3117463 - 327 WP_003414157.1 hypothetical protein -
HR37_RS14880 3117636..3118223 + 588 WP_003914429.1 DUF3558 family protein -
HR37_RS14885 3118242..3119891 + 1650 WP_003899485.1 CocE/NonD family hydrolase -
HR37_RS14890 3119993..3120349 - 357 WP_003414166.1 type II toxin-antitoxin system toxin endoribonuclease MazF9 Toxin
HR37_RS14895 3120333..3120563 - 231 WP_003901465.1 antitoxin MazE Antitoxin
HR37_RS14900 3120606..3121649 - 1044 WP_003414172.1 DUF2293 domain-containing protein -
HR37_RS22295 3121840..3122115 + 276 WP_003911993.1 DUF1778 domain-containing protein -
HR37_RS22495 3122291..3122545 - 255 WP_003917684.1 hypothetical protein -
HR37_RS14915 3122693..3123097 + 405 WP_003414181.1 hypothetical protein -
HR37_RS14920 3123094..3123285 + 192 WP_003414184.1 hypothetical protein -
HR37_RS14925 3123349..3124638 + 1290 Protein_2915 transposase family protein -
HR37_RS14930 3124872..3125129 + 258 WP_003899489.1 hypothetical protein -
HR37_RS14935 3125234..3125545 + 312 WP_003414190.1 hypothetical protein -

Associated MGEs


MGE
detail
Similar
MGEs
Relative
position
MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Integrative and Conjugative Element - - 3104637..3132031 27394


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains


Predicted by InterproScan

Toxin

(3-113)

Antitoxin

(3-29)


Sequences


Toxin        


Download         Length: 119 a.a.        Molecular weight: 12858.73 Da        Isoelectric Point: 9.1962

>T48982 WP_003414166.1 NZ_CP009427:c3120349-3119993 [Mycobacterium tuberculosis]
VMRRGEIWQVDLDPARGSEANNQRPAVVVSNDRANATATRLGRGVITVVPVTSNIAKVYPFQVLLSATTTGLQVDCKAQA
EQIRSIATERLLRPIGRVSAAELAQLDEALKLHLDLWS

Download         Length: 357 bp

>T48982 NZ_CP009427:c3120349-3119993 [Mycobacterium tuberculosis]
GTGATGCGCCGCGGTGAGATTTGGCAGGTCGATCTCGACCCCGCTCGAGGTAGCGAAGCGAACAACCAGCGCCCCGCCGT
CGTCGTCAGCAACGACCGGGCCAACGCGACCGCCACGCGTCTTGGGCGCGGCGTCATCACCGTCGTGCCGGTGACGAGCA
ACATCGCCAAGGTCTATCCGTTTCAGGTGTTGTTGTCGGCCACCACTACTGGTCTCCAGGTCGACTGCAAGGCGCAGGCC
GAGCAAATCAGATCGATTGCTACCGAGCGGTTGCTCCGGCCAATCGGCCGAGTTTCAGCCGCCGAACTTGCCCAGCTCGA
TGAGGCTTTGAAACTGCATCTCGACTTATGGTCGTAG

Antitoxin


Download         Length: 77 a.a.        Molecular weight: 8231.01 Da        Isoelectric Point: 4.1809

>AT48982 WP_003901465.1 NZ_CP009427:c3120563-3120333 [Mycobacterium tuberculosis]
VKLSVSLSDDDVAILDAYVKRAGLPSRSAGLQHAIRVLRYPTLEDDYANAWQEWSAAGDTDAWEQTVGDGVGDAPR

Download         Length: 231 bp

>AT48982 NZ_CP009427:c3120563-3120333 [Mycobacterium tuberculosis]
GTGAAGTTGAGCGTGAGCCTGTCCGATGACGACGTCGCGATCCTGGACGCATATGTGAAACGAGCGGGATTACCATCCCG
CTCCGCCGGCCTGCAGCATGCGATCCGCGTGCTTCGCTACCCCACGCTCGAAGATGACTATGCCAACGCATGGCAAGAAT
GGTCGGCAGCCGGCGACACGGACGCGTGGGAGCAGACCGTCGGCGACGGAGTCGGTGATGCGCCGCGGTGA

Similar Proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures


Toxin

Source ID Structure
PDB 6L2A
PDB 5HJZ
PDB 6KYT
PDB 6L29
PDB 7DU5
PDB 6KYS


Antitoxin

Source ID Structure
PDB 7DU5
PDB 6KYT
AlphaFold DB A0A7U4FBW3

References