48953

Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type II Classification (family/domain) vapBC/VapC-VapB
Location 1234965..1235533 Replicon chromosome
Accession NZ_CP009427
Organism Mycobacterium tuberculosis strain 96121

Toxin (Protein)


Gene name vapC Uniprot ID G0TH08
Locus tag HR37_RS05905 Protein ID WP_003405865.1
Coordinates 1235159..1235533 (+) Length 125 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID G0TH07
Locus tag HR37_RS05900 Protein ID WP_003405863.1
Coordinates 1234965..1235162 (+) Length 66 a.a.

Genomic Context


Locus tag Coordinates Strand Size (bp) Protein ID Product Description
HR37_RS05880 1231006..1231644 - 639 WP_003898730.1 lipid droplet-associated protein -
HR37_RS05885 1231734..1232741 + 1008 WP_003405853.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
HR37_RS05890 1232758..1233741 - 984 WP_003903326.1 hypothetical protein -
HR37_RS05895 1233804..1234877 + 1074 WP_003898732.1 redox-regulated ATPase YchF -
HR37_RS05900 1234965..1235162 + 198 WP_003405863.1 type II toxin-antitoxin system VapB family antitoxin Antitoxin
HR37_RS05905 1235159..1235533 + 375 WP_003405865.1 type II toxin-antitoxin system VapC family toxin Toxin
HR37_RS05910 1235736..1236434 + 699 WP_003898733.1 hypothetical protein -
HR37_RS05915 1236552..1236737 + 186 WP_003901093.1 hypothetical protein -
HR37_RS05920 1236664..1236939 - 276 WP_003405867.1 hypothetical protein -
HR37_RS05925 1237182..1237505 + 324 WP_003405871.1 antibiotic biosynthesis monooxygenase -
HR37_RS05930 1237520..1238230 - 711 WP_003911399.1 hypothetical protein -
HR37_RS22720 1238252..1238461 + 210 WP_003911400.1 hypothetical protein -
HR37_RS05940 1238413..1239120 - 708 Protein_1160 adenylate/guanylate cyclase domain-containing protein -

Associated MGEs


MGE
detail
Similar
MGEs
Relative
position
MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains


Predicted by InterproScan

Toxin

(2-111)

Antitoxin

(1-42)


Sequences


Toxin        


Download         Length: 125 a.a.        Molecular weight: 13444.56 Da        Isoelectric Point: 5.1881

>T48953 WP_003405865.1 NZ_CP009427:1235159-1235533 [Mycobacterium tuberculosis]
VILVDTSVWIEHLRAADARLVELLGDDEAGCHPLVIEELALGSIKQRDVVLDLLANLYQFPVVTHDEVLRLVGRRRLWGR
GLGAVDANLLGSVALVGGARLWTRDKRLKAACAESGVALAEEVS

Download         Length: 375 bp

>T48953 NZ_CP009427:1235159-1235533 [Mycobacterium tuberculosis]
GTGATCCTGGTCGACACTTCGGTATGGATTGAGCACCTGCGCGCCGCCGACGCGCGACTCGTCGAGCTGCTGGGCGATGA
CGAGGCCGGTTGCCATCCGCTCGTCATCGAGGAGCTGGCGCTTGGCTCGATCAAGCAGCGAGACGTTGTTCTCGATCTGT
TGGCCAACCTCTACCAGTTTCCGGTGGTGACCCACGACGAAGTGTTGCGGCTTGTCGGTCGGCGGCGGTTGTGGGGTCGG
GGACTCGGTGCCGTCGATGCCAACCTTCTTGGTTCGGTGGCTCTGGTTGGCGGCGCGCGACTATGGACGCGGGACAAGCG
GTTGAAGGCGGCGTGCGCGGAAAGCGGTGTTGCGCTGGCTGAGGAAGTGTCCTGA

Antitoxin


Download         Length: 66 a.a.        Molecular weight: 6973.03 Da        Isoelectric Point: 11.7327

>AT48953 WP_003405863.1 NZ_CP009427:1234965-1235162 [Mycobacterium tuberculosis]
MRTTVTVDDALLAKAAELTGVKEKSTLLREGLQTLVRVESARRLAALGGTDPQATAAPRRRTSPR

Download         Length: 198 bp

>AT48953 NZ_CP009427:1234965-1235162 [Mycobacterium tuberculosis]
ATGAGGACGACGGTGACCGTTGACGACGCCTTGTTAGCCAAAGCGGCCGAATTGACTGGGGTGAAAGAGAAGTCGACGCT
CCTGCGCGAGGGGTTGCAGACACTGGTCCGGGTGGAGAGCGCCCGGCGGTTGGCGGCTCTCGGCGGCACCGACCCGCAAG
CTACCGCGGCGCCGAGACGCCGGACGTCGCCCCGGTGA

Similar Proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures


Toxin

Source ID Structure
AlphaFold DB G0TH08


Antitoxin

Source ID Structure
AlphaFold DB G0TH07

References