Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapC-mazE/PIN(toxin)
Location 753410..754202 Replicon chromosome
Accession NZ_CP009427
Organism Mycobacterium tuberculosis strain 96121

Toxin (Protein)


Gene name vapC Uniprot ID P9WFB2
Locus tag HR37_RS03475 Protein ID WP_003403386.1
Coordinates 753765..754202 (-) Length 146 a.a.

Antitoxin (Protein)


Gene name mazE Uniprot ID G0TQE0
Locus tag HR37_RS03470 Protein ID WP_003403381.1
Coordinates 753410..753655 (-) Length 82 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
HR37_RS03440 748430..749935 + 1506 WP_003403360.1 carotenoid cleavage oxygenase -
HR37_RS03445 750016..751026 + 1011 WP_031653722.1 ABC transporter ATP-binding protein -
HR37_RS03450 751414..751797 - 384 WP_003403365.1 ribonuclease VapC6 -
HR37_RS03455 751892..752047 - 156 WP_003403368.1 type II toxin-antitoxin system VapB family antitoxin -
HR37_RS03460 752123..752839 - 717 WP_003903122.1 CPBP family intramembrane metalloprotease -
HR37_RS03465 753115..753423 - 309 WP_003403376.1 type II toxin-antitoxin system PemK/MazF family toxin -
HR37_RS03470 753410..753655 - 246 WP_003403381.1 ribbon-helix-helix protein, CopG family Antitoxin
HR37_RS03475 753765..754202 - 438 WP_003403386.1 type II toxin-antitoxin system VapC family toxin Toxin
HR37_RS03480 754199..754453 - 255 WP_003911263.1 antitoxin VapB7 -
HR37_RS03485 754567..756930 + 2364 WP_003403397.1 arylsulfatase AtsD -
HR37_RS03490 756993..757319 + 327 WP_003403401.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
HR37_RS03495 757231..757569 + 339 WP_003403405.1 PIN domain-containing protein -
HR37_RS03500 757566..757739 + 174 WP_003898549.1 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(2-126)

Antitoxin

Ribbon-helix-helix protein, CopG

(2-38)


Sequences

Toxin        


Download         Length: 146 a.a.        Molecular weight: 15245.39 Da        Isoelectric Point: 5.1865

>T48946 WP_003403386.1 NZ_CP009427:c754202-753765 [Mycobacterium tuberculosis]
MIVLDTTVLVYAKGAEHPLRDPCRDLVAAIADERIAATTTAEVIQEFVHVRARRRDRSDAAALGRVTMPNCSRRYSPSIE
ATSKRGLTLFETTPGLEACDAVLAAVAASAGATALVSADPAFADLSDVVHVIPDAAGMVSLLGDR

Download         Length: 438 bp

>T48946 NZ_CP009427:c754202-753765 [Mycobacterium tuberculosis]
ATGATAGTGCTCGACACCACCGTCCTCGTCTATGCCAAAGGCGCCGAGCATCCACTCCGCGATCCCTGCCGCGATCTCGT
CGCGGCAATCGCCGACGAACGCATCGCTGCGACCACCACCGCCGAGGTGATCCAGGAGTTCGTCCACGTACGCGCCCGCC
GGCGCGACCGCAGCGACGCCGCCGCGCTGGGCCGTGTGACTATGCCGAACTGCTCTCGCCGCTACTCACCATCAATCGAG
GCCACCTCGAAGCGCGGCCTGACGCTGTTCGAGACAACGCCAGGGCTTGAAGCCTGCGACGCGGTGCTCGCGGCGGTTGC
CGCAAGCGCCGGCGCGACCGCTCTTGTCTCGGCTGACCCGGCGTTCGCCGATCTGTCGGATGTCGTGCACGTCATTCCCG
ACGCGGCCGGGATGGTCAGCCTGCTCGGCGACCGCTGA

Antitoxin


Download         Length: 82 a.a.        Molecular weight: 9169.01 Da        Isoelectric Point: 4.2070

>AT48946 WP_003403381.1 NZ_CP009427:c753655-753410 [Mycobacterium tuberculosis]
MLSFRADDHDVDLADAWARRLHIGRSELLRDALRRHLAALAADQDVQAYTERPLTDDENALAEIADWGPAEDWADWADAA
R

Download         Length: 246 bp

>AT48946 NZ_CP009427:c753655-753410 [Mycobacterium tuberculosis]
ATGCTCAGCTTCCGCGCCGACGACCACGACGTCGACCTGGCCGACGCGTGGGCGCGTCGCCTACACATCGGCCGCTCCGA
GCTGCTGCGCGATGCGCTGCGACGTCACTTGGCCGCGCTGGCCGCGGACCAGGATGTCCAGGCCTACACCGAGCGACCGT
TGACGGACGACGAGAACGCACTGGCTGAGATCGCCGACTGGGGGCCGGCGGAGGACTGGGCCGACTGGGCCGATGCGGCG
CGGTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A7U4BSW5

Antitoxin

Source ID Structure
AlphaFold DB G0TQE0

References