Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/Txe-YefM
Location 3741826..3742355 Replicon chromosome
Accession NZ_CP009426
Organism Mycobacterium tuberculosis strain 96075

Toxin (Protein)


Gene name relE Uniprot ID G0TI95
Locus tag LJ70_RS17675 Protein ID WP_003417760.1
Coordinates 3742098..3742355 (+) Length 86 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID G0TI94
Locus tag LJ70_RS17670 Protein ID WP_003417757.1
Coordinates 3741826..3742101 (+) Length 92 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
LJ70_RS22830 3738624..3740061 - 1438 Protein_3453 FAD-binding oxidoreductase -
LJ70_RS17655 3740164..3740553 + 390 WP_003417745.1 DUF732 domain-containing protein -
LJ70_RS17660 3740567..3740860 - 294 WP_003417749.1 DUF3017 domain-containing protein -
LJ70_RS17665 3740857..3741702 - 846 WP_003417751.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -
LJ70_RS17670 3741826..3742101 + 276 WP_003417757.1 type II toxin-antitoxin system antitoxin RelJ Antitoxin
LJ70_RS17675 3742098..3742355 + 258 WP_003417760.1 Txe/YoeB family addiction module toxin Toxin
LJ70_RS17680 3742397..3743587 + 1191 WP_003900033.1 NADH:flavin oxidoreductase -
LJ70_RS17685 3743704..3744072 + 369 WP_003417765.1 FHA domain-containing protein -
LJ70_RS17690 3744069..3744620 - 552 WP_003417767.1 pentapeptide repeat protein MfpA -
LJ70_RS17695 3744627..3745208 - 582 WP_003417769.1 ATP/GTP-binding protein -
LJ70_RS17700 3745189..3745557 - 369 WP_003417772.1 DUF742 domain-containing protein -
LJ70_RS17705 3745535..3745927 - 393 WP_003417776.1 roadblock/LC7 domain-containing protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin YoeB

(6-85)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(2-72)


Sequences

Toxin        


Download         Length: 86 a.a.        Molecular weight: 10070.30 Da        Isoelectric Point: 6.4693

>T48928 WP_003417760.1 NZ_CP009426:3742098-3742355 [Mycobacterium tuberculosis]
VRSVNFDPDAWEDFLFWLAADRKTARRITRLIGEIQRDPFSGIGKPEPLQGELSGYWSRRIDDEHRLVYRAGDDEVTMLK
ARYHY

Download         Length: 258 bp

>T48928 NZ_CP009426:3742098-3742355 [Mycobacterium tuberculosis]
GTGAGAAGCGTCAACTTCGATCCCGATGCCTGGGAGGACTTCTTGTTCTGGCTGGCCGCTGATCGCAAAACGGCCCGTCG
GATCACCCGGTTGATCGGAGAAATTCAGCGTGATCCGTTCAGCGGGATCGGCAAACCCGAGCCGCTCCAAGGTGAGTTGT
CGGGATACTGGTCGCGCCGGATCGACGACGAACACCGGCTGGTGTATCGAGCGGGCGACGACGAAGTCACGATGCTGAAG
GCCCGATACCACTACTGA

Antitoxin


Download         Length: 92 a.a.        Molecular weight: 10194.35 Da        Isoelectric Point: 4.6652

>AT48928 WP_003417757.1 NZ_CP009426:3741826-3742101 [Mycobacterium tuberculosis]
MSISASEARQRLFPLIEQVNTDHQPVRITSRAGDAVLMSADDYDAWQETVYLLRSPENARRLMEAVARDKAGHSAFTKSV
DELREMAGGEE

Download         Length: 276 bp

>AT48928 NZ_CP009426:3741826-3742101 [Mycobacterium tuberculosis]
ATGAGCATCAGTGCGAGCGAGGCGAGGCAGCGCCTGTTTCCACTCATCGAACAGGTCAATACCGATCACCAGCCGGTGCG
GATCACCTCCCGGGCCGGCGATGCGGTGCTGATGTCCGCCGACGACTACGACGCGTGGCAGGAAACGGTCTATCTGCTGC
GCTCACCGGAGAACGCCAGGCGGTTGATGGAAGCGGTTGCCCGGGATAAGGCTGGGCACTCGGCTTTCACCAAGTCTGTA
GATGAGCTGCGGGAGATGGCCGGCGGCGAGGAGTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 3OEI

Antitoxin

Source ID Structure
PDB 3CTO
PDB 3OEI
PDB 3D55
AlphaFold DB G0TI94

References