Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) phd-doc/Doc(toxin)
Location 3771523..3772091 Replicon chromosome
Accession NZ_CP009365
Organism Pseudomonas soli strain SJ10

Toxin (Protein)


Gene name doc Uniprot ID -
Locus tag O165_RS17385 Protein ID WP_023628472.1
Coordinates 3771523..3771921 (-) Length 133 a.a.

Antitoxin (Protein)


Gene name phd Uniprot ID -
Locus tag O165_RS17390 Protein ID WP_031314376.1
Coordinates 3771921..3772091 (-) Length 57 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
O165_RS17370 3767195..3767668 + 474 WP_023628470.1 OsmC family protein -
O165_RS17375 3767922..3768710 + 789 WP_038706728.1 alpha/beta hydrolase -
O165_RS17380 3768923..3771214 + 2292 WP_038706729.1 autotransporter outer membrane beta-barrel domain-containing protein -
O165_RS29260 3771395..3771454 - 60 WP_081941344.1 hypothetical protein -
O165_RS17385 3771523..3771921 - 399 WP_023628472.1 type II toxin-antitoxin system death-on-curing family toxin Toxin
O165_RS17390 3771921..3772091 - 171 WP_031314376.1 hypothetical protein Antitoxin
O165_RS17395 3772271..3773848 - 1578 WP_038706730.1 glutamine-hydrolyzing GMP synthase -
O165_RS17400 3773926..3775395 - 1470 WP_023628475.1 IMP dehydrogenase -
O165_RS17405 3775482..3776039 - 558 WP_023628476.1 hypothetical protein -
O165_RS17410 3776090..3776845 - 756 WP_038706731.1 sulfite exporter TauE/SafE family protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Death on curing protein

(9-119)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 133 a.a.        Molecular weight: 14484.46 Da        Isoelectric Point: 4.0137

>T48824 WP_023628472.1 NZ_CP009365:c3771921-3771523 [Pseudomonas soli]
MELIFFPFERVIEINTQILTTEPGMKGAVNLPILQGALARIDNAIAYDGLDDVFEIAAKYTASIARGHGLPDANKRTGLA
VALEYLSLNEYEITLDNDLLADAVRDLVIGVINEHDFADILYSSFIASQNQV

Download         Length: 399 bp

>T48824 NZ_CP009365:c3771921-3771523 [Pseudomonas soli]
ATGGAGTTGATCTTCTTTCCATTCGAGCGTGTGATTGAGATAAATACTCAAATCTTGACAACAGAGCCCGGTATGAAGGG
AGCGGTCAATCTTCCGATCTTGCAGGGAGCGCTGGCACGAATCGACAATGCCATCGCGTATGATGGCCTTGACGATGTCT
TTGAAATTGCCGCCAAATACACTGCCAGTATTGCTCGAGGTCACGGGCTTCCTGACGCTAATAAACGCACCGGCCTTGCT
GTCGCGTTGGAGTACCTGTCGCTCAATGAATACGAAATAACCTTGGACAATGATCTGCTCGCGGATGCCGTTAGGGATTT
GGTTATTGGAGTTATCAATGAGCACGATTTCGCCGATATCCTTTACTCTTCTTTCATCGCTTCGCAAAATCAGGTGTAG

Antitoxin


Download         Length: 57 a.a.        Molecular weight: 6463.66 Da        Isoelectric Point: 10.9951

>AT48824 WP_031314376.1 NZ_CP009365:c3772091-3771921 [Pseudomonas soli]
MNRKLKTYGISIVDRPKIKATKKLDLSGDQGKQIVYSETKLALRTHRKTFQKLADM

Download         Length: 171 bp

>AT48824 NZ_CP009365:c3772091-3771921 [Pseudomonas soli]
ATGAACCGCAAGCTGAAAACGTATGGCATATCCATAGTAGACAGGCCAAAAATCAAAGCTACCAAGAAGCTGGATTTGAG
CGGCGACCAAGGTAAGCAGATCGTTTATTCAGAAACCAAGCTTGCTCTGAGAACACACAGGAAAACTTTTCAAAAGTTGG
CTGATATGTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References