Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1936671..1936815 | Replicon | chromosome |
| Accession | NZ_CP009274 | ||
| Organism | Klebsiella variicola strain DX120E | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1936707..1936809 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1936671..1936815 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KR75_RS09175 | 1931801..1933861 | + | 2061 | WP_012541258.1 | oligopeptidase B | - |
| KR75_RS09180 | 1933865..1934524 | - | 660 | WP_012541259.1 | exodeoxyribonuclease X | - |
| KR75_RS09185 | 1934603..1934833 | - | 231 | WP_012541260.1 | DNA polymerase III subunit theta | - |
| KR75_RS09190 | 1934947..1935321 | + | 375 | WP_039103974.1 | CopC domain-containing protein YobA | - |
| KR75_RS09195 | 1935325..1936194 | + | 870 | WP_039103972.1 | copper homeostasis membrane protein CopD | - |
| KR75_RS09200 | 1936211..1936549 | + | 339 | WP_008804271.1 | YebY family protein | - |
| - | 1936671..1936815 | - | 145 | - | - | Antitoxin |
| - | 1936707..1936809 | + | 103 | - | - | Toxin |
| KR75_RS28905 | 1937194..1937337 | - | 144 | WP_048268691.1 | Ecr family regulatory small membrane protein | - |
| KR75_RS09210 | 1937441..1938409 | - | 969 | WP_162493241.1 | VirK/YbjX family protein | - |
| KR75_RS09215 | 1938566..1939219 | + | 654 | WP_008804273.1 | protein-serine/threonine phosphatase | - |
| KR75_RS09220 | 1939216..1939407 | - | 192 | WP_002911395.1 | YebW family protein | - |
| KR75_RS09225 | 1939505..1939744 | - | 240 | WP_002911393.1 | YebV family protein | - |
| KR75_RS09230 | 1939860..1941293 | - | 1434 | WP_039103970.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T48713 NZ_CP009274:1936707-1936809 [Klebsiella variicola]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 145 bp
>AT48713 NZ_CP009274:c1936815-1936671 [Klebsiella variicola]
ACCGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
ACCGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
