Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1917323..1917594 | Replicon | chromosome |
| Accession | NZ_CP009273 | ||
| Organism | Escherichia coli BW25113 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1917361..1917464 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1917323..1917594 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BW25113_RS09615 (BW25113_1835) | 1914480..1915919 | + | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| BW25113_RS09620 (BW25113_1836) | 1916037..1916273 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| BW25113_RS09625 (BW25113_1837) | 1916378..1916569 | + | 192 | WP_000457842.1 | YebW family protein | - |
| BW25113_RS09630 (BW25113_1838) | 1916570..1917226 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 1917323..1917594 | + | 272 | - | - | Antitoxin |
| - | 1917361..1917464 | - | 104 | - | - | Toxin |
| BW25113_RS09640 (BW25113_1839) | 1917622..1917963 | - | 342 | WP_000976476.1 | YebY family protein | - |
| BW25113_RS09645 (BW25113_1840) | 1917976..1918848 | - | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| BW25113_RS09650 (BW25113_1841) | 1918852..1919226 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| BW25113_RS09655 (BW25113_1842) | 1919365..1919595 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| BW25113_RS09660 (BW25113_1843) | 1919697..1920353 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| BW25113_RS09665 (BW25113_1844) | 1920377..1921039 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T48684 NZ_CP009273:c1917464-1917361 [Escherichia coli BW25113]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT48684 NZ_CP009273:1917323-1917594 [Escherichia coli BW25113]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
