Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2723516..2723787 | Replicon | chromosome |
| Accession | NZ_CP009106 | ||
| Organism | Escherichia coli strain 94-3024 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2723554..2723657 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2723516..2723787 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HW43_RS13395 | 2720673..2722112 | + | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| HW43_RS13400 | 2722230..2722466 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| HW43_RS13405 | 2722571..2722762 | + | 192 | WP_001296140.1 | YebW family protein | - |
| HW43_RS13410 | 2722763..2723419 | - | 657 | WP_000812712.1 | protein-serine/threonine phosphatase | - |
| - | 2723516..2723787 | + | 272 | - | - | Antitoxin |
| - | 2723554..2723657 | - | 104 | - | - | Toxin |
| HW43_RS13420 | 2723815..2724156 | - | 342 | WP_000976472.1 | YebY family protein | - |
| HW43_RS13425 | 2724169..2725041 | - | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| HW43_RS13430 | 2725045..2725419 | - | 375 | WP_000204700.1 | CopC domain-containing protein YobA | - |
| HW43_RS13435 | 2725558..2725788 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| HW43_RS13440 | 2725890..2726546 | + | 657 | Protein_2535 | carbon-nitrogen hydrolase family protein | - |
| HW43_RS13445 | 2726570..2727232 | + | 663 | WP_021292759.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T48388 NZ_CP009106:c2723657-2723554 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT48388 NZ_CP009106:2723516-2723787 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
