Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2773683..2773954 | Replicon | chromosome |
| Accession | NZ_CP009104 | ||
| Organism | Escherichia coli strain RM9387 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2773721..2773824 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2773683..2773954 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HW42_RS13795 | 2770840..2772279 | + | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| HW42_RS13800 | 2772397..2772633 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| HW42_RS13805 | 2772738..2772929 | + | 192 | WP_001296140.1 | YebW family protein | - |
| HW42_RS13810 | 2772930..2773586 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 2773683..2773954 | + | 272 | - | - | Antitoxin |
| - | 2773721..2773824 | - | 104 | - | - | Toxin |
| HW42_RS13820 | 2773982..2774323 | - | 342 | WP_000976472.1 | YebY family protein | - |
| HW42_RS13825 | 2774336..2775208 | - | 873 | WP_000879282.1 | copper homeostasis membrane protein CopD | - |
| HW42_RS13830 | 2775212..2775586 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| HW42_RS13835 | 2775725..2775955 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| HW42_RS13840 | 2776057..2776713 | + | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein | - |
| HW42_RS13845 | 2776737..2777399 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T48363 NZ_CP009104:c2773824-2773721 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT48363 NZ_CP009104:2773683-2773954 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
