Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3216477..3216745 | Replicon | chromosome |
| Accession | NZ_CP009072 | ||
| Organism | Escherichia coli ATCC 25922 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3216605..3216707 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3216477..3216745 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DR76_RS15595 | 3213029..3213691 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| DR76_RS15600 | 3213715..3214371 | - | 657 | WP_000011644.1 | carbon-nitrogen hydrolase family protein | - |
| DR76_RS15605 | 3214474..3214704 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| DR76_RS15610 | 3214843..3215217 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| DR76_RS15615 | 3215221..3216093 | + | 873 | WP_000879311.1 | copper homeostasis membrane protein CopD | - |
| DR76_RS15620 | 3216106..3216447 | + | 342 | WP_000984819.1 | YebY family protein | - |
| - | 3216477..3216745 | - | 269 | - | - | Antitoxin |
| - | 3216605..3216707 | + | 103 | - | - | Toxin |
| DR76_RS15630 | 3216842..3217498 | + | 657 | WP_000812743.1 | protein-serine/threonine phosphatase | - |
| DR76_RS15635 | 3217499..3217690 | - | 192 | WP_001317886.1 | YebW family protein | - |
| DR76_RS15640 | 3217795..3218031 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| DR76_RS15645 | 3218149..3219588 | - | 1440 | WP_001704100.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T48218 NZ_CP009072:3216605-3216707 [Escherichia coli ATCC 25922]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT48218 NZ_CP009072:c3216745-3216477 [Escherichia coli ATCC 25922]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
