Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/VapC-StbC
Location 5099879..5100546 Replicon chromosome
Accession NZ_CP009028
Organism Xanthomonas citri pv. citri strain 5208

Toxin (Protein)


Gene name vapC Uniprot ID M4U0C6
Locus tag AMD17_RS22215 Protein ID WP_005916679.1
Coordinates 5100130..5100546 (+) Length 139 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID M4U000
Locus tag AMD17_RS22210 Protein ID WP_005916676.1
Coordinates 5099879..5100133 (+) Length 85 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
AMD17_RS22185 5096001..5096220 + 220 Protein_4259 RNA 2'-phosphotransferase -
AMD17_RS22190 5096377..5097642 + 1266 WP_015463799.1 cardiolipin synthase B -
AMD17_RS22195 5097668..5098195 - 528 WP_005916668.1 hypothetical protein -
AMD17_RS22200 5098434..5098640 + 207 WP_003489327.1 hypothetical protein -
AMD17_RS22205 5098627..5099733 + 1107 WP_005916674.1 type II toxin-antitoxin system RelE/ParE family toxin -
AMD17_RS22210 5099879..5100133 + 255 WP_005916676.1 Arc family DNA-binding protein Antitoxin
AMD17_RS22215 5100130..5100546 + 417 WP_005916679.1 type II toxin-antitoxin system VapC family toxin Toxin
AMD17_RS25075 5100668..5100871 - 204 WP_125460668.1 hypothetical protein -
AMD17_RS25080 5100999..5101211 - 213 WP_015472901.1 hypothetical protein -
AMD17_RS22220 5101468..5103087 + 1620 WP_015463800.1 hypothetical protein -
AMD17_RS22225 5103191..5103589 - 399 WP_004429277.1 DUF2384 domain-containing protein -
AMD17_RS22230 5103905..5104336 + 432 WP_005922907.1 hypothetical protein -
AMD17_RS24580 5104365..5104691 - 327 Protein_4271 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(2-127)

Antitoxin

Arc-like DNA binding domain

(1-39)


Sequences

Toxin        


Download         Length: 139 a.a.        Molecular weight: 14795.09 Da        Isoelectric Point: 5.6920

>T48116 WP_005916679.1 NZ_CP009028:5100130-5100546 [Xanthomonas citri pv. citri]
VILLDTNVISELWRPQPNPQVVAWIDAQAVETLFLSVVTVAELRFGIAVMPKGRKRSTLHARLEGEVLPLFDGRLLAFDL
DASHAFAALASKARTAGLTLGRADAYIAATAAAQGLTVATRDTAPFEAMALDVINPWS

Download         Length: 417 bp

>T48116 NZ_CP009028:5100130-5100546 [Xanthomonas citri pv. citri]
GTGATCCTGCTCGATACCAATGTCATCTCCGAACTTTGGCGGCCTCAGCCTAATCCGCAGGTCGTCGCCTGGATCGATGC
ACAAGCTGTCGAGACACTGTTCCTGTCGGTCGTGACGGTGGCTGAACTCCGTTTCGGTATTGCCGTGATGCCCAAGGGCC
GAAAGCGATCCACCTTGCATGCTCGGTTGGAGGGCGAGGTATTGCCACTGTTCGACGGGCGCCTGCTCGCATTCGATCTG
GATGCATCACACGCATTTGCGGCGCTTGCATCGAAAGCCAGAACCGCAGGACTCACACTCGGGCGCGCCGATGCCTACAT
CGCTGCAACAGCAGCCGCGCAAGGATTGACCGTTGCCACTCGCGACACGGCACCATTCGAGGCGATGGCGTTAGACGTCA
TTAACCCTTGGAGTTGA

Antitoxin


Download         Length: 85 a.a.        Molecular weight: 8996.53 Da        Isoelectric Point: 11.3362

>AT48116 WP_005916676.1 NZ_CP009028:5099879-5100133 [Xanthomonas citri pv. citri]
MPSFTVRNIPDDVHRAIRARAALHGRSTEAEIRAILELAAKPADRVKLGSLLVSIGRDAGLTAKEANAFDKLRGKAAIKP
IGLK

Download         Length: 255 bp

>AT48116 NZ_CP009028:5099879-5100133 [Xanthomonas citri pv. citri]
ATGCCTTCTTTCACCGTCCGCAATATCCCAGACGACGTGCATCGCGCGATCCGCGCGCGGGCTGCACTTCATGGCCGCAG
CACCGAAGCGGAGATCCGCGCAATCCTTGAATTGGCGGCCAAACCCGCAGACCGGGTCAAACTCGGCTCACTGCTGGTGA
GCATCGGCCGCGACGCCGGCCTGACCGCAAAAGAGGCCAATGCCTTCGACAAGCTGCGCGGCAAGGCGGCGATCAAGCCG
ATCGGTCTGAAGTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB M4U0C6

Antitoxin

Source ID Structure
AlphaFold DB A0A828YKJ0

References